Lactococcus allomyrinae: D7I46_11670
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Entry
D7I46_11670 CDS
T05686
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lact
Lactococcus allomyrinae
Pathway
lact03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lact00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D7I46_11670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lact03019
]
D7I46_11670
Messenger RNA biogenesis [BR:
lact03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D7I46_11670
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AYG01654
UniProt:
A0A387BHB8
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All DBs
Position
complement(2448986..2450671)
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AA seq
561 aa
AA seq
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MPKQLKIKSDEVAVYAIGGLGEIGKNTYGVEYKDEIVIIDAGIKFPEDELLGVDYVIPDY
TYIVENIDRIKGLFITHGHEDHIGGIPFLLKQANIPIYAGPLSLALIRGKLEEHGLLRDA
KLYEIHPDSEIKFNHLSLSFFSTTHSIPEPIAVVVDTPQGKIVATGDFKFDFTPVGVPAD
LHRMAALGTEGVLLLLSDSTNAEIPTFSHSEKVVGASIMKIFERIEGRIIFASFASNIFR
LQQAVDGAVKTGRKIVVFGRSMEKAIVNGLELGYIKAPKGTFIEPNEVNQYPSHELVIMC
TGSQGEPMAALSRIANGMHRHITLQMGDTVVFSSNAIPGNTHGVNQLINKIAEAGVEVIY
GKMNNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMLKIHAGLAQDTGVPKENCFIFE
NGDVLALTSDSARYADHFPASDTYVDGSGIGDVGNAVLHDRHELSEDGIVLAVATVDFEN
KTVLAGPDMLSRGFIYMRESGDLIRSGQRVLFNAIREAMNEENANEASVARAMREALSPF
LYKQTEREPLVVPMIMTPDEK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaattaaaaataaaatctgatgaagttgcagtctacgctatcggtggactc
ggcgaaatcggtaaaaacacttacggtgtcgaatacaaagacgagattgtcatcattgat
gccggtatcaagttcccagaagatgaacttcttggagttgactacgtcattcccgattat
acctatatcgtggaaaacattgaccgtattaaaggtctctttatcacgcatggacatgag
gaccatatcggtgggattccattccttctcaaacaagcaaacatccccatctacgcagga
ccgctatctcttgccttgattcgtggaaaacttgaagaacatggacttttacgcgatgct
aaactctatgaaatccaccctgatagtgaaataaaatttaaccatttaagcttgagcttc
tttagtactactcactctattccagaacctatcgctgttgttgtggatacgcctcaagga
aaaatcgttgccactggtgacttcaaatttgactttacacctgttggcgttccagctgac
cttcaccgtatggcagcacttggtacagaaggtgtcttactgttgctttcggactcaaca
aatgctgaaatccctactttttctcactctgagaaagtggttggtgccagcatcatgaaa
atttttgaacgtattgagggtcgtatcatctttgcttcattcgcatcaaatattttccgt
ctacaacaagctgttgacggcgcagtaaaaactggtcgtaagattgtcgtttttgggcgt
tcaatggaaaaagccattgtcaatgggctagagcttggctatattaaggcaccaaaaggg
acctttattgagccaaatgaggtcaatcaatatccctcacatgaactcgttatcatgtgt
actggttcacaaggtgaaccgatggcagcgcttagccgtattgcaaacggaatgcaccgc
cacatcactctacaaatgggtgacacagtagttttctcatctaatgcaatccctggtaac
acccacggagttaaccaactcattaacaaaatcgctgaagctggtgtagaagtgatttac
ggcaaaatgaataatattcacacctcaggtcatggtgggcaacaagagcaaaaacttatg
cttcgcttgattaaaccaaaatacttcatgcctgttcatggtgaataccgtatgctcaaa
attcatgcaggtcttgctcaagacactggtgttccaaaagaaaattgctttatttttgaa
aacggagatgtgttagctctgacttcagatagtgcgcgctatgctgaccatttcccagct
agtgacacttatgttgatggctctggtattggtgatgtcggaaatgctgtacttcacgat
cggcatgagctttcagaagacggaattgttcttgcagttgcaaccgttgacttcgaaaat
aaaactgtccttgctgggccagatatgctttcacgtggtttcatctatatgcgcgagtct
ggtgacttgattcgtagtggtcaacgtgttttattcaacgccattcgagaagcaatgaac
gaagaaaatgcaaatgaagcttctgttgccagagcaatgcgtgaagcacttagccccttt
ctttacaaacaaacagaacgtgaaccattggttgtaccaatgattatgacacctgatgaa
aaatga
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