Lacinutrix sp. WUR7: FG167_10265
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Entry
FG167_10265 CDS
T10184
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lacw Lacinutrix sp. WUR7
Pathway
lacw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lacw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FG167_10265 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lacw03021
]
FG167_10265 (rpoB)
03400 DNA repair and recombination proteins [BR:
lacw03400
]
FG167_10265 (rpoB)
Enzymes [BR:
lacw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FG167_10265 (rpoB)
Transcription machinery [BR:
lacw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FG167_10265 (rpoB)
DNA repair and recombination proteins [BR:
lacw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FG167_10265 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QRM89594
LinkDB
All DBs
Position
2354284..2358096
Genome browser
AA seq
1270 aa
AA seq
DB search
MLAKQAERLNFSSIINRTEYPDFMDIQIKSFQDFFQLETKSEERGDEGLYNTFLENFPIT
DTRNQFVLEFLDYFIDPPRYSIEECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKSGLKKILGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTVIDKDNIEEILEANVKAILLHKESAE
QGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEV
GRYRMNKKLQLDIGMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SSQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFAK
VNSMGFIETPYRKVTDGVVDIKNEPIYLSAEEEEDKLIAQATVKVDDDGKILDDKVIARM
EGDFPVIDPKELHYTDVAPNQITSISASLIPFLEHDDANRALMGSNMMRQAVPLLRPQAP
IVGTGLERQVASDSRVLINAERNGVVQYVDSLEITIKYDRTDDEAKVSFDSDTKTYPLTK
FRKTNQGTSINLKPIVVKGDKVVKGQVLSEGYATQKGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVREDIFTSIHIDEYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRVGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVINKKLFS
RAVKDKRKRAQDKEDIAQLEALYYTKFDDLQAVLVDKLFTLVNGKTAQGIFNDLGEEVLP
KGKKFTLKMLNAVDDYTHLTSGTWTTDDKTNKLVADLIHNYKIKENDLQGSLRREKFTIS
VGDELPAGIIKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKLGRTYATPIFDGATLDQINEFTDEAGIPRFGHTY
LYDGGTGDRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASATLREILTVKSDDVIGRAKTYESIVKGEPMPDPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttagcaaaacaagctgaaagattaaatttctcatctattatcaatagaactgaatat
ccagattttatggatattcaaataaaatcctttcaggattttttccagttagaaactaaa
tctgaagaaagaggagatgaaggtctatacaatacctttctagaaaacttcccaataaca
gacacacgtaatcaattcgtattagaatttttagattacttcattgatccacctagatat
tctatagaagaatgtattgagagaggacttacatatagtgttccattaaaagcaaggtta
aagttatactgtacagaccctgaacatgaggatttcgagaccattgttcaagatgtgtac
ttaggtacaataccttacatgacaccttctggtactttttgtatcaatggtgcagaacgc
gttgtagtttctcaattacatcgttcaccaggtgtgtttttcggtcaatcattccacgca
aatgggactaaattatactctgcaagagtaataccatttaaaggttcttggattgagttc
gctacagatattaatcaggtaatgtatgcatacattgatagaaagaaaaaattacctgta
actactttatttagagcaattggttttgaaagagataaagatattttagagatttttgat
ttagctgaagaagttaaagtatcaaaatctggacttaagaaaatcttaggacgtaaactt
gctgcacgtgttcttaatacatggcatgaagatttcgttgatgaagatacaggagaagta
gtatcgatcgaacgtaatgaaatcgttttagatcgtgatactgttatagataaagataat
attgaagaaattcttgaagcgaatgtaaaagcaatccttttacataaagaaagtgcagaa
caaggagattatgctattattcataatacacttcaaaaagatcctacaaactctgaaaaa
gaagctgtagaacatatttatagacaactacgtaatgcagagccgccagatgaagaaact
gcacgtggtattatagataaattattctttagtgatcaacgttactctttaggagaagtt
ggtcgttatagaatgaacaagaaattacagttagatatcggtatggataagcaagtgctt
accaaagaagatatcataactattataaaatatttaatcgagcttattaactctaaagcg
gagattgatgatattgatcacctatctaaccgtcgtgtacgtacagtaggagaacaatta
tcttctcaatttggtgttggtttagcacgtatggcacgtactattcgtgagcgtatgaac
gttcgtgataacgaagtatttactcctattgacttaattaatgcaaagacattatcttct
gtaattaattctttctttggtacaaaccaattgtctcaatttatggatcaaaccaatcct
cttgcagagattacgcataagcgtcgtctttccgcattaggaccaggtggtttatctcgt
gaaagagctggtttcgaagtacgtgatgttcactatacacactacggaagactttgtcct
attgaaacaccagagggaccaaacattggtcttatttcttcactttcggtatttgctaaa
gtgaattctatgggattcattgaaacaccttacagaaaagtaacagatggtgtagtagat
attaaaaatgaaccgatttacttaagtgctgaagaggaagaagataaattaatcgcgcaa
gcaactgtaaaagttgatgacgatggtaagattttagatgataaggtaattgcaagaatg
gaaggtgacttcccagtaattgatcctaaggagcttcactatacagatgttgcaccaaat
caaattacatctatttctgcttcattaattcctttcttagaacatgatgatgcgaataga
gccctaatgggatctaacatgatgcgtcaagctgtaccattattacgtccgcaagctcct
attgtaggaactggtttagaacgtcaagtggcttcagattctcgtgtacttattaatgca
gagagaaatggtgttgtacaatatgtagattcactagaaattactataaaatacgatcgt
actgatgatgaagctaaagttagtttcgactcagatacaaaaacatatcctttaacgaag
tttagaaaaaccaatcaaggtacaagtattaacttgaaaccaattgttgtaaaaggagat
aaagttgtaaaaggtcaagttttatctgaaggttatgcaactcaaaaaggagagctagct
ttaggaagaaatatgaaagtagccttcatgccttggaaagggtataactttgaggatgca
attgtaatttctgaaaaagtagtacgtgaagatatttttacatctatacatatagatgag
tattctttagaagttagagatacaaaattaggtaacgaagagttaactaatgatattcct
aacgtatctgaagaagctacaaaagatcttgatgaaaacggaatgattcgtgttggggca
gaagtgaaacctggtgatatccttatcggaaaaattacaccaaaaggggaatcggatcct
actccagaagaaaaattattacgtgcaatctttggtgataaagctggagatgtaaaagat
gcttcattaaaagcttcaccttcattacatggtgttgtaattaataagaagttattctca
agagcggttaaagataaacgtaaacgtgctcaagataaagaagatatagcgcaattagaa
gctttatattatactaagtttgatgatttgcaagctgttttagtggataaattattcact
cttgtaaatggtaaaactgcacaaggtatctttaatgatttaggtgaagaagttcttcca
aaaggaaagaaatttacacttaaaatgttaaatgctgtagatgattatacgcacttaact
tctggtacttggacaacagacgacaagactaacaagttagttgcagatttaattcataac
tacaagattaaagaaaacgatttacaaggttctttaagacgtgagaaatttactatttct
gtaggagatgaattaccagcaggtatcatcaaattagcaaaagtttatattgctaaaaag
cgtaagcttaaagtgggtgataaaatggcaggacgacatggtaacaaaggtattgttgca
cgtattgtacgtcaagaagatatgccattcttagaagatggaacgccagttgatattgta
ttaaatccacttggtgtaccttctcgtatgaacattggtcagatatatgaaacggtatta
ggttgggccggacaaaaattaggtcgtacatacgctacaccaatttttgatggtgctact
ctagatcaaatcaacgaatttacagacgaagctggaattccaagattcggacatacctat
ctttatgatggtggtactggagatcgttttgatcaaccagcaaccgtgggagttatttat
atgttgaaattaggacatatggttgacgataaaatgcacgctcgttcaattggaccatac
tctcttattacacaacaacctcttggtggtaaagcacaatttggtggacaacgttttgga
gaaatggaagtttgggcactggaagcatatggtgcatcagcaaccttacgagaaatattg
acagtgaaatctgatgatgtaattggtagagctaaaacatacgaaagtattgttaaagga
gaaccaatgccagatccaggattaccggaatcattcaatgtattgatgcatgaattgaaa
gggttaggattagacatcagattagaggaataa
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