Lacinutrix sp. WUR7: FG167_10270
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Entry
FG167_10270 CDS
T10184
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lacw Lacinutrix sp. WUR7
Pathway
lacw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lacw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FG167_10270 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lacw03021
]
FG167_10270 (rpoC)
03400 DNA repair and recombination proteins [BR:
lacw03400
]
FG167_10270 (rpoC)
Enzymes [BR:
lacw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FG167_10270 (rpoC)
Transcription machinery [BR:
lacw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FG167_10270 (rpoC)
DNA repair and recombination proteins [BR:
lacw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FG167_10270 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QRM89595
UniProt:
A0A974U495
LinkDB
All DBs
Position
2358179..2362480
Genome browser
AA seq
1433 aa
AA seq
DB search
MARKQDKNTVKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNAEGEPLQKMDFLTEEEYLNILETLPQENQY
LDDTDPNKFLAKMGAECLIDLLARIDLETLSYELRHKANTETSKQRKTEALKRLQVVEAL
KESNENRENRPEWMILKVVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLLDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELRLFECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
REPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVTTAFNADFDG
DQMAVHLPLGPEAILECQLLMLASHNILNPANGSPVTVPSQDMVLGLYYMTKLRTSTKDV
KVKGEGLTFYSAEEVTIAYNEKQVDLNAQIKVRAIDFNEAGELVPQIIETTVGRVIFNKK
VPAAAGYINDVLTKKSLRNIIGDILKVTSVPETADFLDEIKNLGYYYAFKGGLSFSLGDI
IIPPEKQSMIDSANVKVEGIMGNYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGSIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNTVDCGTLRGVEIAPLKKND
EVVETLEERILGRISLNDIYNPLTDELLVGANELITEEIAKAIENSPIDKVDARSPLSCE
AKKGICAKCYGRNLATNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LAVKFDGIAEIEELKTVKGEDNDGNIVDVVISRTSEIKLIDKKTGITLSTNNIPYGSFVQ
VKNGDKLSKGDVVCTWDPYNGVIISEFAGKVRYENIEQGITYQVEVDEQTGFQEKVISES
RNKKLIPTLIVEDSKGEAIRSYNLPVGAHIMIDDGEKVNIGKILVKIPRKSSKAGDITGG
LPRVTELFEARNPSNPAVVSAIDGVVSFGKIKRGNREIIIESKTGDIKKYLVKLSNQILV
QENDFVKAGMPLSDGSITPNDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTIFLEDQLVHKADFIQENDDIFGMKVVENAGDSATLKEGQIVTARVL
RDENSILRREDKALAEARDAKPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKIDTLEGLKENVIVGHRIPAGTGMRNYENIIVGSKEEFDQMMQAKQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaacaagataagaacacagtaaagagatttaataaaatctccattggttta
gcatcaccagaatctattttagcagaatctagaggtgaagttttaaaaccagaaactatt
aattatcgtacacataaaccagaacgtgatggtttattctgtgagcgtatttttggtcct
gtaaaggattatgaatgtgcttgtggtaaatataaacgtattcgctacaaaggtattgta
tgtgatcgttgtggtgttgaagtaaccgaaaagaaagtacgtcgtgacagagtaggacac
attaatttagtagttcctgttgcacatatttggtatttccgttctttaccaaacaaaata
ggttatttattaggacttccttcaaagaagcttgatatgataatttactacgaacgttac
gtagtaattcaaccaggtattgctaaaaatgccgaaggagaaccattacaaaaaatggat
ttcttaaccgaagaagaatacttaaatattctagaaactcttccgcaagaaaaccaatac
ctagatgatacagatcctaacaagttccttgcaaaaatgggagcagaatgtttgatcgac
ttattagctagaatagatttagaaacgctttcatatgaattacgtcataaagcaaatacc
gaaacgtctaaacaacgtaaaacggaagctttaaaacgtttacaagtagtagaagcttta
aaagaatctaacgaaaatagagagaaccgtccagaatggatgatcttgaaagtagtgcca
attatcccaccagaattaagacctttagtgcctttagatggtggacgttttgcaacttcc
gatttaaatgatttatatcgtcgtgtaattattagaaacaatcgtcttaagagattagtt
gaaataaaagcaccagaagttattttacgtaatgagaaacgtatgttacaagagtctgta
gattctttattagataatacacgtaaatcatctgcagtaaaaacagattctaatagacca
ttaaaatcattatcagattcacttaaaggtaagcaaggacgtttccgtcaaaacttactt
ggtaagcgtgtggattattctgctcgttctgtaattgttgttggaccagaattaagatta
tttgaatgtggattgcctaaaaatatggcagcagagctatacaaacctttcgtaattaga
aaactaattgaaagaggaattgtaaaaactgtaaaatctgcaaagaaaattatagataaa
agagaacctgtagtttgggatattttagagaatgttttaaaaggacatccagtactttta
aatcgtgctcctacattacacagactaggtattcaagcttttcaaccaaaattaattgaa
ggaaaagcaattcaattacacccattagtaactactgcatttaatgccgattttgatgga
gatcaaatggcagtgcacttaccattaggaccagaagctattttagaatgtcaattatta
atgttggcttctcataatatcttaaatccagcaaatggttcgccagtaactgtaccttca
caggatatggtacttggtctttactatatgaccaaactaagaacttcgactaaagacgta
aaagttaaaggagaaggtttaactttctattctgccgaagaagtaactattgcttacaac
gaaaagcaagtagacttaaatgcgcaaattaaagtaagagcaatagattttaatgaagca
ggagaattagttcctcaaattattgaaactactgttggtcgtgtaatctttaataagaaa
gtaccagctgcagcaggatatataaatgatgtattaactaaaaaatcactaagaaatatt
attggtgatattttaaaagtaacatcagtacctgaaacagcagatttcttagatgaaatt
aaaaacttaggatactactacgcatttaaaggtggtttatcatttagtttaggagatatt
attattccaccagaaaagcaatctatgattgattctgcaaacgtaaaagtggaagggatt
atgggtaactataacatgggacttataacaaataatgaacgttataaccaagttattgat
atctggacttcaaccaatgcagaactgacagaattgtcaatgaagcgtattcgtgaagat
caacaaggtttcaactcggtgtatatgatgcttgattctggagcccgtggatctaaagaa
cagattcgccagttaacaggaatgcgtggattaatggcgaagcctaaaaaatctactgca
ggaggtggatcgattattgaaaatccaattctttctaactttaaggaaggtctttctatt
ttagaatactttatttctacgcacggtgcacgtaaaggtcttgccgatacagcacttaaa
actgccgatgcaggttacttaacacgtcgtctagtagatgtatctcaagatgtaattgta
aacacggtagattgcggtactttaagaggtgtagaaattgcgccacttaaaaagaatgat
gaagttgttgaaactttagaagaaagaatcttaggtcgtatttcattaaacgatatatat
aatccattaacagacgaattattagttggggctaatgagttaattacagaagaaattgca
aaagcaattgaaaactcaccaatagataaagtagatgctcgttcaccattaagttgtgaa
gctaagaaaggtatttgcgctaaatgttatggtagaaaccttgcaactaacaaaatggtg
caacgtggagaagcagtaggagttgtggcagcacagtctattggagaaccaggtacacag
ttaacattacgtacattccacgtaggtggtattgcaggtaacatttctgaagaaaataaa
ttagctgttaagtttgacggtattgcagagattgaggaattaaaaactgtaaaaggggaa
gataacgatggtaacatcgttgatgttgtaatctctcgtacttctgaaatcaaattaata
gataagaaaactggtattactttaagtactaacaatattccttatggttcctttgttcaa
gttaaaaacggagacaaattatctaaaggagatgtagtttgtacttgggatccatataat
ggtgtaattatttcagaatttgctggaaaagttcgttatgagaacattgaacaaggtatt
acttatcaagttgaagttgatgagcaaacaggtttccaagagaaagtgatttctgaatct
agaaacaaaaagcttattccaacacttattgttgaagatagtaaaggcgaagcaattcgt
tcttacaacttaccagtaggagctcacattatgattgatgatggtgagaaggttaatatt
ggtaaaattttagttaagattccacgtaagtcttctaaagcaggagatattacaggaggt
ttaccacgtgtaacagaattgtttgaagcacgtaatccttctaaccctgcagtagtaagt
gctattgatggtgttgtttcttttggtaaaattaaaagaggtaatcgtgagattattata
gaatctaaaactggagatattaagaaatacctagttaaattatcgaatcaaattcttgta
caagaaaacgattttgtaaaagcaggtatgcctttatcagatggttctataacacctaac
gatattcttaatataaaaggaccttcagcggtacaacaatacttagttaacgaagtacaa
gaagtatatcgtttacaaggtgtaaaaattaacgataagcacttcgaagttgttgtaaga
caaatgatgcgtaaagttagaattatagattctggtgatactatcttcttagaagatcaa
ttagtacataaagcagatttcattcaagaaaatgatgatatctttggaatgaaagttgtt
gaaaatgctggtgattctgctaccttaaaagaaggacaaattgtaacagcacgtgtgtta
agagatgaaaattctattttacgtcgtgaggataaagcattagcggaagctagagatgct
aaacctgcaactgctacacctatcttacaaggtattacaagagcatcgctacaaacaaaa
tcatttatatctgcagcttctttccaagaaactaccaaggtattaaatgaagctgctgta
gcaggtaaaattgatactctagaaggacttaaagaaaatgtaattgtaggacacagaatt
ccagcaggaacaggaatgcgtaactatgaaaacattatcgtaggatctaaagaagagttt
gatcaaatgatgcaagcaaaacaagaggttaactataattaa
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