Lachnoclostridium sp. YL32: A4V08_04965
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Entry
A4V08_04965 CDS
T04430
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lacy
Lachnoclostridium sp. YL32
Pathway
lacy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lacy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A4V08_04965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lacy03021
]
A4V08_04965
Transcription machinery [BR:
lacy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A4V08_04965
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_20
DprA_WH
Motif
Other DBs
NCBI-ProteinID:
ANU45274
LinkDB
All DBs
Position
complement(1197017..1198141)
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AA seq
374 aa
AA seq
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MEGTDVFEEKLAGLLEEAKKKKNVLEYQEVMNYFGQEPPAANQLDRLFEFLDQNKVDVIR
MGTEDELDPDLFIEEEMELDEEEEIDMEHLDLSVPEGVSLEDPVRMYLKEIGKIPLLGME
DEVELAKKMELGDPEARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVERF
DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPT
TEEIAARLDLPVERVSEIMKMSQEPVSLETPIGEEEDSHLGDFIQDDNVLVPQDAAAFTL
LHEQLMEVLLTLTEREQKVLRLRFGLDDGRPRTLEEVGKQFNVTRERIRQIEAKALRKLR
HPSRSKKLKDYLDE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggaagggacggacgtgtttgaggagaaactggcaggacttctggaggaagccaagaaa
aagaaaaatgtattggaataccaggaggtcatgaattattttggtcaggagccccctgcc
gccaaccagttggacaggctgtttgagttcctggaccagaataaggtggacgtcatccgc
atggggacagaggatgagctggacccggacctttttatcgaggaggaaatggaactggat
gaagaggaagaaatagatatggagcacctggacctgtcggttcccgagggcgtcagcctg
gaggaccctgtgcgcatgtatctgaaggagattgggaagattcctctcctgggcatggag
gatgaggtggagctggccaagaagatggagctcggcgacccggaagccaggaaacgcctg
gcagagtccaacctgcgcctggtggtcagcattgcaaagcggtatgtgggcaggggaatg
cagtttttagacctgattcaggaaggaaacctggggcttatcaaggcagtggagagattt
gattataccaaggggtataagttcagcacctatgccacatggtggatccgccaggccatt
accagggctattgcggaccaggccagaaccatacggattccggtccatatggtggaaacc
atcaaccgcctggtgcgcacctcccgccagcttctgcaggagctgggaagggagcccact
acagaggagattgcggccaggctggacctgccggtggagcgggtatctgaaatcatgaag
atgtcccaggagccggtgtccttagagacgcccatcggcgaggaggaggacagccacctg
ggagactttatacaggatgacaatgtgctggtgcctcaggacgcggcagccttcaccctt
ctccatgaacagctgatggaagttctgctgacactgacagagcgggaacagaaggtgctg
cgccttcggttcggcctggacgacggacgtcccaggaccctggaggaagtgggaaagcag
tttaatgtgacgagggagaggatacgccagattgaggcaaaggccctgcgcaagctgcgc
catcccagcagaagtaaaaagttaaaggattatctggatgaatag
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