Lachnoclostridium sp. YL32: A4V08_05115
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Entry
A4V08_05115 CDS
T04430
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lacy
Lachnoclostridium sp. YL32
Pathway
lacy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lacy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4V08_05115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lacy03019
]
A4V08_05115
03009 Ribosome biogenesis [BR:
lacy03009
]
A4V08_05115
Enzymes [BR:
lacy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A4V08_05115
Messenger RNA biogenesis [BR:
lacy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4V08_05115
Ribosome biogenesis [BR:
lacy03009
]
Prokaryotic type
rRNA helicases
A4V08_05115
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Hyccin
AAA_19
Card1_endonuc
Bromo_TP_like
IL34
Motif
Other DBs
NCBI-ProteinID:
ANU45297
LinkDB
All DBs
Position
complement(1231011..1232720)
Genome browser
AA seq
569 aa
AA seq
DB search
METVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGL
PLLQKVDPKVKKLQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVKQIRSL
KDGTQVIVGTPGRVMDHMRRKTIKADHVLTVVLDEADEMLNMGFLEDMETILSQLPEERQ
TLMFSATMPQAIAEIARKFQKDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMSRLLDM
YAPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNGRTDILVAT
DVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVMGKEVYKLRDIQR
YCKTKIIPQAIPSLNDITEIKVEKILDQVQEVLNDTDLTKMVNIIEKKLMEEDYTSMDLA
AALLRMSMGDESEDIIDSFETARSLDELDSFGRGSSRGRGRERSSYGNRRKGATDRAAVD
YVLGEGDEKMARLFINIGKAQRITPGDILGAVAGESGIPGRMVGSIDMYDGYTFVDVPGR
YADDVLKAMAHAKIKGKNIHVEKANTNRR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggagacagttaagtttgacgagttacaattagacgagcggattatccgcgccatcaca
gagatggggtttgaagaggcatcgccgattcaggctcaggccattccggtagccatggag
ggacgggacatgattggccaggcacagaccggaacaggcaagacagccgccttcggtctg
cctcttcttcagaaggtggacccgaaggtgaagaagcttcaggctatcgtgctgcttcct
accagggagctggccatccaggtggcggaggagatgcgccgttttgcaaagttcatgcac
ggtgtgaaggtgctgcctatatacggcggccaggatatcgtaaagcagatccgttcctta
aaggacggaacacaggttatcgtgggaacaccgggccgtgtcatggaccatatgagaagg
aagacgataaaggctgaccatgttctcactgtggtgctggatgaagcggatgagatgctg
aatatgggattcctggaggatatggagactatcttaagtcagctgcctgaggagcgccag
acgctgatgttctcagccaccatgccccaggccattgcggagattgccaggaagttccag
aaggatccggtgacggttcgcgtgattaagaaggagctgaccgtgcctaaggtgacccag
tactattatgaggttaagccgaagaacaaggtggaggttatgagccgtctgctggatatg
tatgcgccgaagctttccattgtgttctgcaatacaaagcgtcaggtggatgacctggtg
caggagctgcagggaagaggatatttcgcggaaggacttcatggagatttaaagcaggtc
cagcgtgaccgtgtcatggacagcttccgtaatgggcgcaccgacattctggtggccacg
gatgtggctgcgaggggcatagatgtaggggatgtggaagctgtgttcaattatgatatt
cctcaggatgacgagtactacgtacaccgcatcggccgtaccggcagagcgggaagggaa
gggaaggcattcagccttgttatgggcaaggaggtctataagctcagggatatccagcgt
tactgcaagactaaaatcattcctcaggccattccgtctttaaatgatatcacggaaatc
aaggtggagaagattctggatcaggtgcaggaagtgttaaatgacacggatctgaccaag
atggtgaacatcattgagaagaagcttatggaggaggattatacctccatggatttggcc
gcggcccttctcaggatgagtatgggagacgagagcgaagacatcatcgacagctttgag
acagcccgttctctcgatgaactggacagctttggacggggaagcagccgcggcagaggc
cgcgagcgcagctcctacggaaaccgccgcaagggagcaacggaccgcgctgctgtggat
tacgtgctgggcgaaggggacgagaagatggcaagactgttcatcaacatcggcaaggcc
cagagaatcaccccaggagacattctgggagcggttgccggggaatcaggaattccggga
cgcatggtgggaagcattgacatgtatgacggatatacctttgtggatgtgccgggacgc
tatgccgatgatgtgctgaaggccatggcccatgccaagattaagggaaagaatattcac
gtggaaaaagccaatactaacagaagataa
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