Lachnoclostridium sp. YL32: A4V08_17640
Help
Entry
A4V08_17640 CDS
T04430
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lacy
Lachnoclostridium sp. YL32
Brite
KEGG Orthology (KO) [BR:
lacy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lacy03016
]
A4V08_17640
Enzymes [BR:
lacy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A4V08_17640
Transfer RNA biogenesis [BR:
lacy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A4V08_17640
Prokaryotic type
tRNA splicing ligases
A4V08_17640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
OST3_OST6
Motif
Other DBs
NCBI-ProteinID:
ANU50523
LinkDB
All DBs
Position
3688469..3689704
Genome browser
AA seq
411 aa
AA seq
DB search
MFVMYEKENMKVPVRVWLKERKDLEGSCLEQAYHLSQLPFLHKWVSLMPDTHAGKGMPIG
GVIAADGVVIPNAVGVDIGCGMAYTETNIRVADIREVITGNGSLIQAIVGDIMRNVPVGF
AHHKTMMPSYTMDCAFEEMDRYEEDAELLGQLEAGYYQIGTLGGGNHFIELQEDDDGYLA
VMIHSGSRHFGKSVCDYFHYKARQLNQTWFSSVPDEYRLAFLPVDTREGKQYLNWMQLSM
DFAKENREKMMLAVKAILEKWIGKYTELSLEFSHDINCHHNYASFENHYGKDVWVHRKGA
VSAQNGELAVIPGAMGSYSYVVMGKGNPESFCSSSHGAGRQYSRKGAMATFSCEEVILDL
QKQGVILGKKGKADVAEESRFAYKNIEEVMDNQQDLVVPVKRLKTIGVVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtgatgtatgaaaaagaaaatatgaaggttccggtaagggtatggctgaaggaa
cgcaaggatttggaaggcagttgcctggaacaggcatatcatctttcacagcttcccttc
cttcacaagtgggtgagtctgatgccggatacacacgccggaaagggaatgcccattgga
ggcgtcattgcggcggacggcgtggtcattcccaatgctgtgggtgtggacatcggctgc
ggcatggcttatacggagaccaacatcagggtggctgacatcagggaggttatcacgggc
aacggttccctcatccaggctatcgtaggcgatatcatgcgcaacgtgcccgtgggattt
gcacaccataagaccatgatgcccagctataccatggactgcgcctttgaggaaatggac
cggtatgaggaggatgcggagcttctgggacagctggaggcaggatattaccaaatcggt
acgctgggaggcggaaatcattttattgagctccaggaggacgacgacggttatctggct
gtgatgattcactcgggaagccgccattttggaaagtcggtctgcgattacttccactat
aaggcaagacagctaaaccagacatggttcagctctgtgccggatgaatacaggctggcc
ttcctgccggtggacaccagagaggggaaacaatacctgaactggatgcagctgtccatg
gattttgccaaagagaacagggaaaagatgatgttagctgtgaaagccattctggaaaaa
tggattggcaagtataccgaactttcactggaattctcccatgacataaactgccaccac
aattatgcctcctttgaaaaccactatggaaaggatgtgtgggtccataggaaaggcgct
gtcagcgctcagaacggagaattagccgtgattccgggggccatgggttcttacagctat
gtggtcatgggaaaaggaaatccggagagcttctgctcttcatcccatggagccggccgg
caatattcgagaaaaggcgccatggctacattttcctgtgaggaagtcattctggattta
cagaaacagggtgtgattctgggtaagaagggaaaggctgacgtggcggaggagagccgg
tttgcctataagaacattgaggaggttatggataaccagcaggatctggtggttcctgtg
aagcgccttaagaccataggtgtggtgaagggatag
DBGET
integrated database retrieval system
