Lachnoclostridium sp. YL32: A4V08_25450
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Entry
A4V08_25450 CDS
T04430
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lacy
Lachnoclostridium sp. YL32
Pathway
lacy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lacy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4V08_25450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lacy03019
]
A4V08_25450
03400 DNA repair and recombination proteins [BR:
lacy03400
]
A4V08_25450
Enzymes [BR:
lacy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4V08_25450
Messenger RNA biogenesis [BR:
lacy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4V08_25450
DNA repair and recombination proteins [BR:
lacy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A4V08_25450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ANU48653
LinkDB
All DBs
Position
5346953..5348857
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AA seq
634 aa
AA seq
DB search
MTQYEILKHYFGYDTFRDGQDVLIQSILEGRDVLGIMPTGAGKSLCYQIPALMMDGITLV
ISPLISLMKDQVSSLNQVGILAAYINSSLTAAQYYKVLDLARAGRYPIIYVAPERLMSED
FLRFALSSQVKISMVAVDEAHCVSQWGQDFRPSYLKIVDFINQLPDRPVVSAFTATATAQ
VRDDIIDILMLRNPQVMTTGFNRPNLYFGVQSPKDKYATMVNYLERHKGESGIIYCLTRK
VVEEVCSQLIREGFSVTRYHAGLSDSERRHNQEDFIYDRAQIMVATNAFGMGIDKSNVRF
VVHYNMPKNMESYYQEAGRAGRDGEPSECILLYGGQDVVTNQFFIDHNQDNEALDPVTRE
IVMERDRERLRKMTFYCFTNECLRDYILRYFGEYGSNYCGNCSNCLSQFGTVDVTDISRI
LIGCVESCRQRYGTNVIIDTVRGANTAKIRNYRMDGNPHYGKLAKVPAYKLRQVMNHLML
NGYLAVTNDEYAIVKLTGKSKGILEEGEPVAMKMAREAEHPAKVAGASAGKGRKGRKGLA
AGAAGLAGPGGAEFTEADEMLFEKLRAVRTEIAKEEKVPPYIVFSDKTLTHMCIMKPATK
AEMLDVSGVGEFKYEKYGERFLACVQAEMDNQRQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgacacaatatgagatattaaaacattattttggttatgacacattcagggatgggcag
gatgtgctgatccagagcattctggaaggaagggacgtgctgggaatcatgcccactggg
gccggaaaatccctttgttatcaaatccctgcccttatgatggatggaatcacgctggtc
atttccccgcttatttccctgatgaaggaccaggtaagcagcttaaaccaggtgggaatc
ctggctgcttacattaacagttcgctgacagcggcgcagtattataaggtactagacctg
gccagggccggcagatatccgattatctatgttgctccggagcgcttgatgtctgaggat
ttcctgcggtttgcactgagcagccaggtaaagatatccatggtagctgtggacgaggcc
cattgcgtatcacagtggggccaggatttcagacccagctatctgaaaatagtggatttc
ataaaccagcttccggaccggcccgttgtaagcgcatttacagccaccgccacagcgcag
gtgcgggatgacatcatcgacatactcatgctcagaaatccccaggtcatgaccacgggc
tttaaccggccgaatctctactttggcgtacagtcccccaaggataaatatgccaccatg
gtaaattacctggaacgccataagggggaaagcggtatcatctattgcctgaccaggaaa
gtggtggaggaggtctgcagccagttgattcgggaaggattttccgttacccggtatcat
gcgggcttaagcgacagtgagcgcaggcataaccaggaggattttatatatgaccgggcc
cagatcatggttgccaccaatgcctttggcatggggattgacaagtcgaatgtcaggttt
gtggtgcattataacatgccgaagaacatggaatcgtattaccaggaggccggcagggca
ggaagggatggtgagccctcagagtgcatccttctgtacggcggccaggatgtggtaacc
aatcagttctttattgaccataaccaggacaacgaggcgttggacccagtaacccgggag
attgtcatggagcgggacagggaacgcctgcggaagatgacattttactgctttacaaat
gaatgcctgagagattacatactgagatattttggggagtatggaagcaattactgcggc
aattgctccaactgtctgagccagtttgggacagtggatgtgacggatatttcccggata
ctgattggatgtgtggagagctgccggcagaggtacggaaccaatgtgattattgatacg
gtccgcggtgccaacacagcgaagatacgcaattacaggatggatgggaacccgcattat
gggaaactggcaaaggtaccggcgtacaagctgcgccaggtcatgaaccatctgatgctg
aacggatatctggcagtgacaaacgatgagtatgcgattgtgaaattgacaggaaaatca
aaggggatcctggaagaaggagagccggtggccatgaagatggccagggaagcggagcat
cctgccaaagtggccggcgcaagtgccggaaagggaagaaaaggcaggaaggggctggcc
gcaggggcagcgggcctggccggaccgggaggagcagagtttacggaagcagacgaaatg
ctgtttgagaagctgcgcgctgtcaggacagagattgcaaaggaagaaaaggtgccgcct
tatattgtattttcagataagactttgactcatatgtgcatcatgaagccggctaccaaa
gcggagatgctggatgtttcaggcgtgggagagtttaagtatgagaagtacggggagcgt
tttttggcttgtgtgcaggcggaaatggataaccagcgacagtga
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