Luteibacter aegosomatis: L2Y94_13260
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Entry
L2Y94_13260 CDS
T09054
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
laeg
Luteibacter aegosomatis
Pathway
laeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2Y94_13260 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laeg03019
]
L2Y94_13260 (rnr)
03016 Transfer RNA biogenesis [BR:
laeg03016
]
L2Y94_13260 (rnr)
Enzymes [BR:
laeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L2Y94_13260 (rnr)
Messenger RNA biogenesis [BR:
laeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L2Y94_13260 (rnr)
Transfer RNA biogenesis [BR:
laeg03016
]
Prokaryotic type
tRNA degradation factors
L2Y94_13260 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rho_RNA_bind
HC2
Glycos_transf_1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UPG84310
LinkDB
All DBs
Position
complement(2973094..2975865)
Genome browser
AA seq
923 aa
AA seq
DB search
MTKKKKGSGGDKGPRKAKATRPGKALAKYRDRLPPPAVNDPHAEREAQRYDQPIPSREAI
LALLEQRGELVSAEDIARALRLFTDYEINALGKRLAAMIRDGQLLRNRRGGYAPAQKLSL
IPGRVIANAEGYGFLRPDEGGDDLYLSPSQMRSVLHGDRVLASVVGIDRRGRRQGAIVEV
LERRSPRLVGRIVVENGVTLVEPDDRRLHQNIMIPAGRDAGARSGEIVVAEITDPPTPHR
GPMGTIRAVLGQRLQPSLVVEMAIASHDLPHEWPAQVVRQAEEVEPKVTAAERKGRVDLR
DLPLVTIDGEDARDFDDAVYAEPLKGGGFRLIVAIADVSHYVPIGTPLDTEAYERSTSTY
FPGFVVPMLPETLSNGICSLNPRVDRLCMVCDMEVDEQGEVQHAKFYEAVMYSHARLTYT
KVWQAVGERDAEVRREIADVLPQVENLHRLYKAMAKARKRRGAIDFETPEVKFRLAPSGD
VVSMGASERNDAHKLIEECMIAANVQAAKFLSRRRIPALYRVHAPPPAEKYEDLLQFLRE
FKLKLPPADEVTPADFSALLKKVQDRPEAELIQSVLLRSQSMAVYHPENQGHFGLALDAY
AHFTSPIRRYPDLLVHRAIRYAITKGKPSDYVYSEAQMAAMAVHCSQRERRAEEAERDVD
ERFKCAWMEKHVGEEFAGTITGVTSFGLFVELAASRVSGLVHVSQLPNDYYKFDPTRHLL
AGERTGASYRLGDYVSVQVLRASLEDRKIDFRLVARLQSLPKPVAVPAPVAKESTPGNAM
AEAGKAIGRAVKKMAQRLGGTRKAKAGVAPPAPVGDDARPSVEPVEVVPSRRSRSGADVS
ARKPAAVSKAPAGKVAAKDVAAARPNGKATARQAIGREAVAKKAVAKKAVAKKTAVKKTV
AKKASETKAPATKSASRKPRSKS
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaagaaaaagaaaggttccggtggcgataaaggcccccgtaaagccaaggctacg
cgcccgggcaaggcgctggccaaataccgcgaccggctgccgccgccggccgtgaacgat
ccacacgccgagcgcgaggcgcagcgctacgatcagcccattcccagccgcgaggcgatc
ctcgcgctcctcgagcagcgcggcgaactggtgtccgcggaggacatcgcacgcgccctg
cgcctgttcaccgattacgagatcaacgcgctgggcaagcgcctcgcggcgatgatccgc
gacggccagctcctgcgtaaccggcggggcggctatgcgcccgcgcagaagctcagcctc
atccccggccgcgtgatcgccaatgccgagggttacggtttccttcgacccgacgagggt
ggggatgacctctacctctcgccctcgcagatgcgcagcgtgctgcacggcgaccgcgtg
ctcgccagcgtggtcggcatcgaccgccgcggccgccgccagggtgcgatcgtcgaggtg
ctggaacgccgttcgccgcgcctggtgggtcgcatcgtggtggagaacggggtcaccctc
gtcgaaccggacgaccgccgcctgcaccagaacatcatgattcccgccggccgcgacgcg
ggcgcccgttcgggcgagatcgtggtggccgagatcaccgatccgccgacgccgcatcgc
ggtccgatgggtaccatccgcgccgtgctcggccagcgcctgcaaccgtcgctggtggtg
gaaatggccatcgccagccacgacctgccgcatgaatggccggcccaggtagtgcgccag
gccgaggaggtggaaccgaaggtcaccgccgccgagcgcaagggccgggtcgacctgcgc
gacctgccgctcgtgaccatcgacggcgaggatgcgcgcgacttcgacgacgccgtctat
gccgagccgctgaagggcggcgggttccgtctcatcgtggccatcgccgacgtctcgcat
tacgtgcccatcggcacgccgctcgacaccgaggcctacgaacgcagcacgtcgacgtac
ttccccggcttcgtggtgccgatgctgccggaaacgttatccaacggcatctgttcgctc
aatccgcgcgtggatcgcctgtgcatggtctgcgacatggaggtggacgagcagggcgaa
gtgcagcacgcgaagttctacgaggcggtgatgtattcgcacgcacgcctgacctatacc
aaggtctggcaggcggtgggggagcgcgacgccgaagtgcgccgggagatcgcggacgtg
ctgccccaggtggaaaacctgcatcgcctctacaaggccatggcgaaagcacgcaagcgt
cgcggggccatcgatttcgagacgcccgaggtgaaatttcgcctcgcgccgtcgggcgac
gtggtgtcgatgggcgcctccgagcgcaacgacgcgcacaagctcatcgaggaatgcatg
atcgcggccaacgtgcaggccgcgaaattcctctcccggcgcaggattcccgcgctctac
cgcgtgcatgcgccgccgccggcggagaaatacgaagacctcctccagttcctgcgcgag
ttcaagctgaagctgcccccggccgacgaggtgacgccggcggatttctcggcgctgctg
aagaaggtgcaggatcgtcccgaagcggaattgatccagtcggtgctgctgcggtcccag
agcatggccgtgtaccacccggaaaaccagggccacttcggcctggcgctggatgcgtac
gcgcatttcacctcgccgatccgccgctaccccgacctgctggtgcatcgcgcgatccgt
tatgccattaccaagggtaagccgtcggactacgtctacagcgaggcgcagatggccgcg
atggccgtgcattgctcgcagcgcgagcgccgcgcggaagaagccgagcgggacgtcgac
gagcgcttcaagtgcgcatggatggaaaagcacgtgggcgaggagttcgccggcaccatt
acgggcgtcacgtcgttcggtttgttcgtggagctggcggcctcgcgggtttccggcctc
gtccacgtatcgcaactgcccaacgactactacaagttcgatcccacccgtcacctgctg
gcgggcgagcgcaccggcgcgagctatcgcctgggcgattacgtgagcgtgcaggtgcta
cgcgcgagcctggaagatcgcaagatcgatttccggctcgtggcccgcctgcagtcgctg
cccaagcccgtcgccgtaccggctccggtcgcgaaggagtccacgcccggcaacgccatg
gccgaagcgggcaaggccatcggccgtgccgtgaagaagatggcgcagaggctcggcggc
acgcgcaaggcgaaagccggggttgctcctcccgcgccggttggcgatgatgcgcggccg
tcggtcgagccggtcgaggtcgttccgtcgcgccggtcgcgttcgggcgccgatgtgtcg
gcacgcaagcccgccgcggtctcgaaagctccggccgggaaggttgccgcgaaggacgtg
gcggcggcacggccaaatggcaaggcgaccgccagacaggcgatcggtagggaagcggtg
gcgaagaaggctgtcgccaaaaaagccgtcgcgaagaaaaccgcggtgaagaagaccgtc
gcgaaaaaggcttccgaaacgaaggccccggcgacgaagtcggcatcgcgcaaacccagg
agcaagtcgtaa
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