Luteibacter aegosomatis: L2Y94_14675
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Entry
L2Y94_14675 CDS
T09054
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
laeg
Luteibacter aegosomatis
Pathway
laeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
laeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L2Y94_14675 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laeg03400
]
L2Y94_14675 (mfd)
Enzymes [BR:
laeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L2Y94_14675 (mfd)
DNA repair and recombination proteins [BR:
laeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L2Y94_14675 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AroM
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
Glyco_tran_WecG
AAA_22
DUF6961
Motif
Other DBs
NCBI-ProteinID:
UPG84566
LinkDB
All DBs
Position
3265929..3269378
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVALPRPPLPANAKTRRYWAAPHGSSWALEVAEAARAHDGLLVVVTRDTRSADNLESEL
GVFAGDLPVLHFPDWETLPYDVFSPHPEVVSQRIATLYRLPGVKRGVLVVPVATLMQRIS
PRSHITGSGLVMRKGQKLDIVAEQRRLEAAGYRFVPQVTEPGDFAVRGALIDIYAMGASE
PYRVELFDDEIESIRTFDPETQRSQHQVEGVELLPAREFPVTDEAAKSFRNALRDRFPID
VRRCPLYQDMKEGVTPGGIEYYLPLFFAKTETLFEYLAGDTLFVLGEGALESAAAFWQQV
ADRYDQRAHDIERPVLPPAEIYLAPEQLREQLNKQVRIDVVGKAHEHAVDLGTQPAPELP
LNRKGEEPGTALRHFLAHYPGRVLVAADSAGRREALIEQLGGAGLKPAGIEGWKTFLATD
ERFAITVASLEQGFALNEPALTVLTERELFGERVRTDRRKRAGAARDPESIIKDLTELSI
GSPIVHIDHGVGRYQGLLTLDVGDMPGEFLTIEYAKGDKLYVPVAQLGLVSRYTGTAPEL
APLHSLGGDAWERARKKAAEKVRDVAAELLAIYAQREAKQGESLPVDRQMIEEFAATFPF
EETIDQQRAIDAVITDLAAPRAMDRVVCGDVGFGKTEVALRAAFAAATAGKQVAVLVPTT
LLAQQHYRNFADRFADWPVRVEVLSRFKSKKEVDNALERLADGQVDVMVGTHKLLQSDIR
FKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTLTATPIPRTLNMAMSGLRDLSIIATP
PAHRTAVRTLISTYQPTLIREAIQRELARGGQVYFLHNEVESIERTARELGELVPEARIR
VAHGQMPERELEQVMADFHRQRFNVLVSTTIIESGIDIPTANTIIVNRADRFGLAQLHQL
RGRVGRSHHRAYAYLIVPDRKAMTADAEKRLEALASLEELGAGFTLATHDLEIRGAGEML
GEEQSGQIQEIGFGLYTELLDRAVRALKSGKVPDFDLTSEHETEVELHLPALIPEDYLPD
VHTRLTLYKRIASARDDDGLRELQVEMIDRFGLLPDQTKCLFAVAQLKLMATPLGIRKLD
FGPSGGRVTFRDKPDIDPMALIKLIQQQPRVFKMDGQDKLRVIMELPGSAERIRAAQETL
VSLGARRPS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtagcgcttccccgcccgccgcttcccgccaacgccaagacccgccgctactgg
gccgcgccccatggctcctcctgggccctcgaggtcgccgaggcggcccgcgcccacgac
ggcctgctggtggtggtgacgcgcgacacgcgcagcgccgacaacctcgaaagcgaactg
ggcgtcttcgccggcgatctgccggtgctgcacttccccgactgggaaaccctgccctac
gatgtcttcagcccgcatcccgaggtcgtttcccagcgcatcgccaccctttaccgcctg
cccggcgtcaagcgtggcgtgctggtggtgccggtggccaccctgatgcagcgcatctcg
ccgcgcagtcacatcaccggctccgggctcgtgatgcgcaagggccagaagctcgacatc
gtggccgagcagcgccgcctggaggcggccggctatcgcttcgtgccgcaggtgaccgag
cccggcgatttcgccgtgcgcggcgcgctcatcgacatctacgccatgggcgcgagcgaa
ccctatcgcgtcgagctgttcgacgacgagatcgaatccatccgcacgttcgatcccgaa
acccagcgctcgcagcaccaggtggaaggggtggaactgcttcccgcgcgcgagtttccg
gtcaccgacgaagcggccaagtcgttccgcaacgcgctgcgcgaccgctttcccatcgac
gtgcgccgctgcccgctctaccaggacatgaaagaaggcgtgacgccgggcggcatcgaa
tattacctgccgctgttcttcgcgaagaccgaaaccctgttcgaatacctcgccggcgac
acgctgttcgtgctgggcgaaggcgcgctggaatcggcggccgccttctggcagcaggtg
gcggaccgctacgaccagcgcgcccacgacatcgagcgccccgtgctgccacctgccgag
atctaccttgcgccggaacagcttcgcgagcagctcaacaagcaggtgcgcatcgacgtg
gtcggcaaggcccacgagcacgccgtggacctcggcacgcaaccggcccccgagctgccg
ctcaaccgcaagggcgaggaacccggcacggcgcttcgccacttcctcgcgcattacccc
ggccgcgtgctggtagccgccgattcggcgggccgtcgcgaggcgttgatcgagcaattg
ggcggcgccggcctgaagcccgccggtatcgagggctggaagacctttctcgccaccgac
gagcgcttcgccatcaccgtggcctcgttggaacagggctttgcgctgaacgaacccgcg
ctcacggtgctgaccgagcgcgagctgttcggcgaacgcgtgcgcaccgaccggcgcaag
cgcgcgggcgcggctcgcgaccccgagagcatcatcaaggatctcaccgaactgtccatc
ggctcgcccatcgtccacatcgaccacggcgtggggcgttaccagggcctgctcacgctc
gacgtgggcgacatgccgggcgagttcctcaccatcgaatacgccaagggcgacaagctc
tacgtaccggtggcccagctgggcctggtcagccgctacaccggcacggcccccgaactg
gcgccgctgcattccctcggcggcgacgcctgggaacgcgcgcgcaagaaggccgccgag
aaggtgcgcgacgtggccgccgaactgctcgcgatctacgcgcagcgcgaggcgaaacag
ggcgagtcgctgccggtggaccggcagatgatcgaggaattcgccgccacgttccccttc
gaggaaaccatcgaccagcagcgtgccatcgacgccgtcatcaccgacctcgccgcgcca
cgcgcgatggatcgcgtggtctgcggcgacgtgggcttcggcaagaccgaggtggcgctg
cgcgccgcgttcgccgccgccaccgccggcaagcaggtggccgtgctcgtgcccaccacc
ctgctcgcccagcagcactaccgcaacttcgccgaccgcttcgccgactggccggtgcgc
gtggaagtgctctcgcgcttcaagtcgaagaaggaagtggacaacgccctggaacgcctc
gccgatggccaggtcgacgtgatggtaggcacgcacaagctgctccagtccgacatccgc
ttcaagaacctcggcctggtcatcgtcgacgaagaacagcgtttcggcgtacgccagaaa
gagcaactgaagaaactccgcgccgaggtcgatctcctcacgcttaccgcgacgccgatc
ccgcgcacgctcaacatggccatgagcggcctgcgcgatctttcgatcatcgccacgccg
cccgcccatcgcacggcggtacgcacgctgatttccacctaccagcccacgctcatccgc
gaagccatccagcgcgaactggcgcgtggcggccaggtgtacttcctgcacaacgaggtg
gagtcgatcgagcgcaccgcccgcgagctgggcgagctggtgcccgaggcgcgcattcgc
gtggcccacggccagatgcccgagcgcgagctggaacaggtcatggccgacttccatcgc
caacgcttcaacgtgctggtgtccaccaccatcatcgagtcgggcatcgacattcccacg
gccaacacgatcatcgtgaaccgcgccgaccgcttcggcctggcccagttgcaccagctt
cgtggccgcgtggggcgttcacaccatcgcgcctacgcctatctgatcgtgcccgaccgc
aaggccatgaccgcggacgccgagaagcgtctggaagccctggcgtcgctggaagaactg
ggtgcgggtttcaccctcgccacgcacgatctcgagatccgcggcgcgggcgagatgctg
ggcgaggagcaatccggtcagatccaggaaatcggcttcggcctctacaccgagctgctc
gatcgcgccgtccgtgcgctgaagtcgggcaaggtgcccgatttcgacctcacgtcggag
cacgagaccgaggtggagctgcacctgcccgcgctcattccggaggattacctgcccgac
gtgcacacgcgcctgacgctgtacaagcgcatcgccagcgcgcgcgacgacgatggactc
cgcgagttgcaggtcgagatgatcgaccgcttcggtctgctccccgaccagaccaagtgc
ctgttcgcggtggcccagctgaagctgatggccacgccgctgggtatccgcaagctcgat
tttggccccagcggcggccgcgtcaccttcagggacaagccggacatcgatccgatggcc
ctcatcaagctcatccagcagcagccgcgggtgttcaagatggacggacaggacaagctg
cgcgtcatcatggaattgccggggagcgcggagcggattcgggcggctcaggagacgctc
gtgtcgctgggagcgcgtcgtccctcctga
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