Luteibacter aegosomatissinici: L2Y97_01930
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Entry
L2Y97_01930 CDS
T09055
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
laeo
Luteibacter aegosomatissinici
Pathway
laeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2Y97_01930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laeo03019
]
L2Y97_01930
Enzymes [BR:
laeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L2Y97_01930
Messenger RNA biogenesis [BR:
laeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L2Y97_01930
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UPG94889
LinkDB
All DBs
Position
427561..429309
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AA seq
582 aa
AA seq
DB search
MSQTVLTDVFYENLELHPLLQQGLATVGITRCTPIQALTLPVALTGRDVAGQAQTGTGKT
FAFLVALMDRLLKNPAAPGRKDSDPRALIIAPTRELAIQIEKDFQTIGKATGLRSALIYG
GVDYDKQRQQLRDGCDIIIATPGRLLDYYKQDVFGFGSVEVMVIDEADRMFDLGFIKDVR
FIFRRLPAREKRQVLLFSATLSHRVLELAYEHMHEAEKLVVETENVTADRVRQVVYFPSK
EEKMPLLLNLLEESKAERSIIFVNTKAAAERITDRLKRHNFRVGAISGDVPQVKRQKLLQ
RFQDGQIDMLVATDVAARGLHIPAVSHVFNYDLPQDAEDYVHRIGRTARLGAEGDAISFA
CDLYAMGLPDIETYINQKIPTASIDARLLVMPAPRPRADGVQDEVDDPNDTGGHIPTRGA
PPEKSGRGGRGGRDGQRSGSRSGSGSGERSGNRERRPRQDKPAGGSTEVPVKTVVVAETV
AELPAAAEAMAADSAPKKRRRRGGRGRGRREGGEGAPPVRIQDANTSATPRPAGADGATA
NGSRRPSRHVAASRPAATPAPVAAPVKKEGFFRRLGRIFGGK
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagaccgtacttaccgacgtcttttacgaaaacctcgagctccatcccctgctg
cagcagggcctcgccaccgtcggcatcacccgctgcacgcccatccaggcgctgaccctc
ccggtcgccctgaccggccgcgatgtcgcgggccaggcccagaccggcaccggcaagacc
ttcgccttcctcgtggcccttatggaccgcctgctgaagaacccggccgccccggggcgc
aaggattctgacccgcgcgccctcatcatcgcgcccacccgcgaactcgccatccagatc
gagaaggatttccagacgatcggcaaggccaccggcctgcgtagcgccctgatctatggt
ggcgtggattacgacaagcagcgccagcagctgcgcgacggttgcgacatcatcatcgcc
acccccggccgcctgctcgattactacaagcaggatgtgttcggctttggcagcgtcgaa
gtgatggtcatcgacgaagccgaccgcatgttcgacctgggcttcatcaaggatgtgcgc
ttcatcttccgccgtctgccggcccgcgagaagcgccaggtgctgttgttctcggccacc
ctgagccaccgcgtgctggagctggcctacgagcacatgcacgaggccgaaaaactggtg
gtggagaccgaaaacgtcaccgccgaccgcgtccgccaggtggtctacttcccctccaag
gaagaaaagatgccgctgctgctcaacctgctcgaggagagcaaggccgagcgcagcatc
atcttcgtgaacaccaaggccgcggccgagcgcatcaccgatcgcctcaagcgccacaat
ttccgcgtgggcgccatctcgggcgacgtgccgcaggtcaagcgccagaagttgctgcag
cgtttccaggatggccagatcgacatgctggtcgccaccgatgtggcggcgcgcggcctg
cacatcccggctgtgagccacgtgttcaactacgacctgccgcaggatgccgaagactac
gtgcaccgcatcggccgtaccgcccgcctgggtgccgaaggcgatgccatcagcttcgcc
tgcgacctgtacgcgatgggcctgccggacatcgagacctacatcaaccaaaagatcccg
acggcgtcgatcgatgcgcggctgctggtgatgccggcccctcgcccgcgcgccgatggc
gtgcaggacgaggtggatgatccgaacgacaccggcggccatattccgacccgcggcgcg
ccgccggagaagagtggtcgtggcggccgtggcggtcgcgatggccagcgctccggttcg
cgctcgggctcgggctcgggtgagcgatcgggcaatcgcgagcgccgtccccgccaggac
aagccggccggtggctcgaccgaagtgccggtgaagaccgtggtggtggccgagacggtg
gccgaactgcccgccgccgccgaagccatggctgccgattcggcacccaagaagcggcgc
cgtcgtggcggtcgtggccgtggccgtcgtgagggtggcgaaggtgcgccgccggtccgg
atccaggacgccaatacctccgccaccccgcgcccggcgggtgcggatggtgcgacggcg
aacggcagccgccgcccgtcgcgtcacgtcgcggcgtcgcggccagcggccacgccggca
ccggtcgccgcgcccgtgaagaaggaaggcttcttccgccgcctgggtcgcatcttcggc
ggcaaataa
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