Luteibacter aegosomatissinici: L2Y97_05070
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Entry
L2Y97_05070 CDS
T09055
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
laeo
Luteibacter aegosomatissinici
Pathway
laeo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
laeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L2Y97_05070 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
laeo03021
]
L2Y97_05070 (rpoC)
03400 DNA repair and recombination proteins [BR:
laeo03400
]
L2Y97_05070 (rpoC)
Enzymes [BR:
laeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L2Y97_05070 (rpoC)
Transcription machinery [BR:
laeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L2Y97_05070 (rpoC)
DNA repair and recombination proteins [BR:
laeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L2Y97_05070 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UPG95481
LinkDB
All DBs
Position
1146388..1150602
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVIDPGLTALERGQLLSEDQYLEATEEHGDEFDARM
GAEAVYELLKSLDLPGEVIRLKEEIASTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREESQVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA
RALMMSSNNVLSPANGEPIIVPSQDVVLGLYYMTRELVNAKGAGMVFANLGEVRRAYDNR
AVELHAKVKVRVRIFELAEDGTRSASTQIVDTTVGRALLAEIIPEGLPFALVNVELTKKN
ISRLINQSYRLLGLKESVVFADKLMYTGFRFATRAGISIGIDDMKIPGEKKAILEEAEKE
VVEIQEQYQSGLVTAGERYNKVVDIWSRTNELVAKAMIDGIGTEKVTDAEGKQVSQKSMN
SLYIMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEHDCGTEDGVMMSPIVEGGDVVEPLRERVL
GRVVVEDVYAPGEGDEPIVTRDTLLDEGLVEKLDKAGVQLIKVRSPITCRASHGVCALCY
GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVRTTGSLK
FNNLKSVEHSAGHLVAVSRSGEVSVIDVNGRERERYKVPYGATIAVKDGDPVKAGQTVAN
WDPHTHPIVTEVAGVVRFIDFIDGVTVQSQTDELTGLESAVVTDPKRRGTQAKDLRPIVR
LEDSKGRELKLPGTDIAAQYFLPAGAIVSIQNGAEVGVGDVVARIPQETSKTRDITGGLP
RVADLFEARKPKEPAILAERSGIVSFGKDTKGKQRLIIKDADGNEHEELIPKWRQVIVFE
GEHVEKGETVVDGEPNPHDILRLLGVEPLASYLVKEIQDVYRLQGVKINDKHIEAIIRQM
LRKVEITEAGDSTYLRGEQVERVRINEENERAEKRGERPTEFESVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHAARRSQSGLTDADL
QTLQGSGSSVSFEEAPAGSNDSAE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctgttcaaccagcagcgacagacgctggacttcgacgcgatc
aagatcgccctggcttcgccggagctgatccgttcctggtcgtacggcgaagtgaagaag
ccggaaacgatcaactaccgcacgttcaagcctgagcgtgacggtctgttctgcgcggct
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtcgtgtgcgaaaagtgcggtaccgaggtcaccctggccaaggtccgtcgtgag
cgcatgggccacatcgagctggccagccccaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctcatgctggacatgacgctgcgtgacatcgagcgcatcctgtac
ttcgaagcgttcgtcgtgatcgatccgggcctgaccgcgcttgagcgcggccagctgctc
agcgaagaccagtacctggaagccaccgaagagcacggcgacgagttcgatgcccgcatg
ggtgccgaggccgtctacgagctgctgaagagcctcgacctgccgggcgaagtcattcgc
ctgaaggaagagatcgcctcgaccaattcggaaaccaagctgaagcgcctcaccaagcgc
gtgaagctgatcgaagcgttcctggaatccggcaacaagccggagtggatggtgctgacc
gtgcttccggtgctcccgccggatctgcgtccgctcgtcccgctggatggtggccgtttc
gccacctccgacctgaacgacctgtaccgccgcgtcatcaaccgtaacaaccgcctgaag
cgcctgctcgaactcgctgcgccggacatcatcgtccgcaacgagaagcgcatgctgcag
gaatcggtcgatgcgctgctcgacaacggccgccgcggccgtgccatcaccggcacgaac
aagcgcgcgctgaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacc
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgcttgagctgttcaagcccttc
atcttcgccaagctccaggcccgcggcgaagcgaccacgatcaaggctgccaagaagctg
gtcgagcgcgaagagtcgcaggtgtgggacatcctggaagaggtgatccgcgaacatccg
gtcatgctgaaccgtgcgcccacgctgcaccgtctcggcatccaggcgttcgagccggtc
ctcatcgaaggcaaggcgatccagctgcacccgctcgtctgtacggcattcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgatcgaggcgcagctcgaagcc
cgtgccctcatgatgtcgtcgaacaacgtgctgtcgccggcgaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggcctgtactacatgacccgcgaactggtgaatgcc
aagggcgcaggcatggtgttcgcgaacctcggtgaagtgcgccgtgcgtacgacaaccgt
gcggtcgaactccacgccaaggtcaaggtgcgcgtgcgcatcttcgagctggccgaggac
ggcacccgttcggccagcacgcagatcgtggataccacggtcggccgtgcgctgctcgcc
gagatcatcccggaaggcctgccgttcgccctggtgaacgtcgagctgaccaagaagaac
atctcgcgcctgatcaaccagagctaccgcctgcttggtctcaaggaatcggtcgtgttc
gcggataagctgatgtacaccggcttccgcttcgcgacgcgcgccggcatctccatcggt
atcgacgacatgaagatcccgggcgagaagaaggcgatcctcgaggaagccgagaaggaa
gtcgtcgagatccaggagcagtaccagtcgggtctcgtgaccgccggcgagcgctacaac
aaggtcgtcgacatctggtcgcgtacgaacgaactcgtcgcgaaggccatgatcgacggt
atcggtaccgagaaggtgaccgatgccgaaggcaagcaggtcagccagaagtccatgaac
tcgctgtacatcatggccgactcgggtgcgcgtggtagcgcggcccagattcgccagctg
gcaggtatgcgcggcctcatggctcgcccggacggctcgatcatcgagacgccgatcaag
gcgaacttccgcgaaggcctgaacgtgctgcagtacttcaactccacccacggtgcccgt
aagggcctggcggatacggcgctgaagaccgcgaactcgggttacctgacccgccgtctc
gtggacgtggcgcaggacgtggtcatcaccgagcacgattgcggcacggaagatggcgtg
atgatgtcgccgatcgttgaaggcggtgacgtggtcgagccgctgcgcgagcgcgtgctg
ggccgcgtggtcgtcgaggacgtctacgccccgggcgaaggcgacgagccgatcgtcacc
cgcgatacgctgcttgacgaaggcctggtcgagaagctcgacaaggctggcgtgcagctg
atcaaggtgcgctcgccgatcacctgccgtgccagccatggcgtgtgcgccctgtgctac
ggccgcgacctggcccgtggtcacctggtgaacatgggtgaggccgtgggcgtggtcgcc
gcacagtccatcggtgagccgggtacccagctgacgatgcgtacgttccatatcggtggt
gcggcttcccgtgccgctgccgtggataacgtcaccgtccgcaccaccggttcgctgaag
ttcaacaacctgaagtcggtcgagcactcggccggtcacctcgtggccgtgtcgcgttcg
ggcgaagtcagcgtgatcgacgtcaacggtcgcgagcgcgagcgttacaaggtgccttac
ggtgcgaccatcgcagtgaaggacggcgacccggtgaaggccggccagaccgtcgcgaac
tgggatccgcacacccacccgatcgtcacggaagtggccggtgtggtccgcttcatcgat
ttcatcgatggcgtgaccgtccagtcgcagaccgacgaactgaccggcctcgagtcggcg
gtggtgaccgatccgaagcgtcgtggtacgcaggccaaggatctgcgcccgatcgtccgc
ctggaagacagcaagggccgcgagctcaagctgccgggtacggacatcgcggcccagtac
ttcctgccggcaggcgccatcgtgtcgatccagaacggtgccgaagtgggcgtgggcgac
gtggttgcccgtatcccgcaggaaacctcgaagacccgcgacatcaccggtggtctgccc
cgcgtggccgatctgttcgaagcccgcaagcccaaggagccggcgatcctcgccgagcgc
tcgggtatcgtgagcttcggcaaggacaccaagggcaagcagcgtctcatcatcaaggat
gcggacggcaacgagcacgaagagctgattcccaagtggcgccaggtcatcgtgttcgaa
ggcgagcacgtggagaagggcgaaaccgtcgtggacggcgagccgaatccgcatgacatc
ctgcgcctgctgggtgtcgagccgctggccagctacctggtcaaggaaatccaggacgtc
taccgcctccagggtgtgaagatcaacgacaagcacatcgaagcgatcattcgccagatg
ctccgcaaggtcgagatcacggaagcgggcgacagcacctacctgcgcggtgagcaggtg
gagcgcgtccggatcaacgaggagaacgagcgcgccgagaagcgtggcgagcgtccgacc
gagtttgaatcggtcctgctcggcatcaccaaggcctcgctcgccaccgagtcgttcatc
tcggcggcctcgttccaggagaccacccgcgtcctcaccgaggcggccgttcgcggcacc
cgtgatacgttgcgtggcctcaaggaaaatgttattgttgggcggctaatccctgcgggt
acgggtctggcctaccacgctgcgcgtcgtagccagagcggcctgacggatgcggacctg
cagaccctccagggctcgggctcctccgtctcgttcgaagaggctcccgccgggtccaac
gatagcgccgagtga
DBGET
integrated database retrieval system
