Luteibacter aegosomatissinici: L2Y97_07695
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Entry
L2Y97_07695 CDS
T09055
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
laeo
Luteibacter aegosomatissinici
Pathway
laeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2Y97_07695 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laeo03019
]
L2Y97_07695 (rne)
03009 Ribosome biogenesis [BR:
laeo03009
]
L2Y97_07695 (rne)
Enzymes [BR:
laeo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L2Y97_07695 (rne)
Messenger RNA biogenesis [BR:
laeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L2Y97_07695 (rne)
Ribosome biogenesis [BR:
laeo03009
]
Prokaryotic type
rRNA processing factors
L2Y97_07695 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UPG95980
LinkDB
All DBs
Position
complement(1710781..1714158)
Genome browser
AA seq
1125 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQNLYDLDIEIPSREQKKANIYKGRITRVEPSLEACFVDY
GAERHGFLPLKEISRDYFNPNAEGKSNIRELLKEGQEIIVQVEKEERGNKGAALTTFISL
AGRYMVLMPNNPRAGGVSRRIEGEDRQALKEALEHLSVPDEMGLIVRTAGMGRDAEELQW
DLDYLLQLWKSISAAATSQKAPFLIYQESKLFIRALRDYLRNDIGEILIDEESLFKDARD
FVQQVMPNNLRKLKLYQDATPLFSRYQIETQIESIFERNVRLPSGGSIVIDQTEALTAID
INSSKATKGSDIEETAFNTNLEAATEIARQLRIRDAGGLIVIDFIDMDSPRHQREVEERL
KDALKADRARVQIGRISRFGLLEMSRQRLRPSLGEATQNVCPRCEGHGHIRSVESLGLST
LRLIEEHAMKENTGQVLVQAPPSVANFMLNEKRASVVEIELRHSVHVVVVADDKLETPHL
EITRIREADMGEHSKPSYERTTPVVATALPKMGQMLGSGEQPLVTGVVPSSPAPIRDDEP
ESVAAPAQAARSTAPAAPTGGFFSRLFSGLFGGGAKPAPVVVAAPAPASGRREESRSGGR
NDRNDRNRRDERRGEGRGKGEQRQGQRKDKEKDNAQGRQGQQQPKAKQDKGQQRQGEDKA
ARQKDGQQAQGGRQGGRQDQQEKNPNNNENRRQQQPRNERQQQGEKADKAEKVEKAATPP
QAQRPQAEKPAAPVAAPVTDEALLTAPATELPASTGEAVEANTAVGEASREAGEGGQRRR
RGRRGGRRRRRQEDGAQAGAIEGGIEGADLDDEDGDDDIGAGRDSATVPPVLASTEATAN
AVKAEAPRAEATRPVEPGDEEHVPSALTLPSLPKLPPIPGNTASTAPAATAHEPVSPADS
VDVRTSERRQTESDAPLKTAPVASSHTPVPAAAAPSESVLDAPARGIASDELAVPAPTIE
PVKAEVAPAAPADPAIETTEATVPAVEPATPSVEAVKPAEAPKANGIAPDDVATAPTDDA
SESAKTAEAEKQPVAVAPAAAEAPKPAQTPTPAVVTTPVATAPAPAPAPAAVSSAEPATP
KSPEASNVSHVSHAPAAPTDQPTWTPPTQGDLLTRPRHEPHDGQA
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtatgttgatcaacgcgactcagcgcgaagagttgcgcgtggccatcgtcgat
ggccagaacctttacgatctcgacatcgaaatcccgtcccgggaacagaaaaaggccaat
atttacaaaggccgcatcacccgcgtcgaaccctcccttgaagcctgcttcgtcgattac
ggcgccgagcgccatggcttcctgccgctgaaggaaatctcccgcgattacttcaacccc
aacgcggaaggtaaatcgaatatccgcgagctcctgaaggaaggccaggagatcatcgtc
caggtcgagaaggaagaacgcggtaacaagggcgccgccctcaccacgttcatcagcctc
gccggccgttacatggtgctgatgccgaacaacccgcgtgcgggtggtgtgtcgcgccgt
atcgaaggcgaggatcgccaggcattgaaggaagccctcgagcacctctcggtgccggat
gagatgggcctgatcgtgcgtaccgccggcatgggccgcgacgccgaagaactgcagtgg
gatctggattacctgctccagctgtggaaatcgatttcggcggccgccacctcgcagaaa
gcgccgttcctgatctaccaggaatcgaagctgttcatccgcgcgctgcgcgactacctg
cgtaacgatattggcgagatcctcatcgacgaggaatcgctgttcaaggacgcgcgcgat
ttcgtccagcaggtcatgccgaacaacctgcgcaagctcaagctgtaccaggacgccacc
ccgctcttctcgcgctaccagatcgaaacccagatcgaatcgatcttcgagcgcaatgtg
cgcctgccctcgggcggctccatcgtcatcgaccagaccgaagccctgaccgccatcgac
atcaactcgtcgaaggccaccaagggcagcgatatcgaagagacggcgttcaacaccaac
cttgaggccgcgaccgagattgcccgccagttgcgcatccgcgacgccggcggcctcatc
gtcatcgacttcatcgacatggacagcccgcgccaccagcgcgaggtggaagagcgcctg
aaggacgccctcaaggccgaccgtgcccgcgtccagatcggccgcatcagccgcttcggc
ctacttgagatgtcgcgccagcgcctgcgcccgagcctgggcgaggccacgcagaatgta
tgcccgcgttgcgaaggccacggccatatccgcagcgtggagtcgctgggcctgtcgacc
ctgcgcctcatcgaagaacacgccatgaaggagaacaccgggcaggtcctggtgcaggcg
ccgccgtcggtcgccaacttcatgctcaacgaaaagcgcgccagcgtcgttgaaatcgag
ctgcgccacagcgtgcacgtggtggtcgtggccgacgacaagctcgagacgccgcacctc
gaaatcacccgcatccgcgaagcggacatgggtgaacacagcaagccgagctacgagcgc
accaccccggtggtcgccaccgccctgccgaagatgggccagatgctgggcagcggcgag
cagccgctggtgaccggtgtcgtcccctcctcgccagcgcccatccgcgatgacgagccg
gaatccgtcgctgcgccggcccaggccgcgcgcagcaccgcaccggcagcgccgacgggc
ggcttcttctcgcgcctgttcagtggcctgttcggtggcggcgccaagccggcaccggtc
gtcgtggctgccccggcacccgcctcgggccgtcgtgaggaatcgcgttcgggcggccgt
aacgatcgcaacgaccgcaaccgtcgtgacgagcgtcgtggcgaaggccgtggcaagggc
gagcagcgccagggccagcgaaaggacaaggaaaaggacaacgcccagggccgccagggc
cagcagcagccgaaggccaagcaggacaagggccagcagcgccagggcgaggacaaggcc
gcacgccagaaggacggccagcaggcccagggtggtcgccagggcggccgccaggatcag
caggaaaagaaccccaacaacaacgagaaccgccgccagcagcagccgcgcaacgagcgc
cagcagcagggtgaaaaggcagacaaggccgagaaggtcgagaaggccgccaccccgccc
caggctcagcgcccccaggccgagaagccggcggcaccggtggccgcgccggtcaccgac
gaagcactgctgacggccccggccaccgagctgcctgccagcacgggcgaagccgtcgag
gcgaacaccgccgtaggcgaagccagccgcgaagccggcgaaggcggccagcgccgtcgc
cgcggccgtcgtggcggccgtcgccgccgtcgccaggaagatggtgcccaggcgggtgcc
atcgagggcggcatcgaaggtgccgatctcgatgacgaggatggtgatgacgacatcggt
gccggtcgcgacagcgccaccgtgccgcccgtgctcgctagcaccgaagcgaccgccaac
gccgtgaaggccgaagccccgcgcgccgaggccacgcgcccggtagagccaggcgatgaa
gagcacgtgccttccgcgctcaccctgccttcgctgccgaagctgccgcccatcccgggc
aataccgcgtcgaccgccccggccgccacggcgcatgagccggtctcgccggccgattcg
gtcgacgttcgtaccagcgagcgccgccagaccgaatcggatgcgccgctgaagacggcc
ccggtcgcttcctcgcacacgccggtaccggccgccgccgcgccttctgagtccgtgctc
gatgcaccggcccgtggcatcgcgtccgatgaactggccgttcccgcgccgacgatcgag
ccggtgaaggccgaggttgctccggcggctccggcagatcccgctatcgaaaccaccgaa
gccaccgtaccggccgtcgaaccggcaaccccgtccgtggaagcggtaaagcccgcggag
gccccgaaggctaacggcatcgcgcccgacgacgtcgccacggcccccaccgatgacgcc
agcgaatcggcgaagacggcggaagctgaaaagcagccggtagcggtcgctcccgccgct
gccgaggcaccgaagcccgcccagacgccaacaccggcggttgtcaccacgccagttgcc
acggcaccggcaccggcaccggcaccggctgcagtgtcgtcggccgaaccggccacgccg
aaatcgcccgaagcatcgaacgtctcgcacgtttcgcacgcgccggctgccccgacggac
cagcccacctggacgccgccgacccagggcgacctgctcacgcggccgcgtcacgagccg
cacgacggccaggcgtaa
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