Luteibacter aegosomaticola: L2Y96_07830
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Entry
L2Y96_07830 CDS
T09073
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
laes
Luteibacter aegosomaticola
Pathway
laes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2Y96_07830 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laes03019
]
L2Y96_07830 (rne)
03009 Ribosome biogenesis [BR:
laes03009
]
L2Y96_07830 (rne)
Enzymes [BR:
laes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L2Y96_07830 (rne)
Messenger RNA biogenesis [BR:
laes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L2Y96_07830 (rne)
Ribosome biogenesis [BR:
laes03009
]
Prokaryotic type
rRNA processing factors
L2Y96_07830 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UPG91664
LinkDB
All DBs
Position
complement(1775220..1778588)
Genome browser
AA seq
1122 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQNLYDLDIEIPSREQKKANIYKGRITRVEPSLEACFVDY
GAERHGFLPLKEISRDYFNPNAEGKSNIRELLKEGQEIIVQVEKEERGNKGAALTTFISL
AGRYMVLMPNNPRAGGVSRRIEGEDRQALKEALEHLSVPDEMGLIVRTAGMGRDAEELQW
DLDYLLQLWKSISAAATSQKAPFLIYQESKLFIRALRDYLRNDIGEILIDEESLFKDARD
FVQQVMPNNLRKLKLYQDPTPLFSRYQIETQIESIFERNVRLPSGGSIVIDQTEALTAID
INSSKATKGSDIEETAFNTNLEAATEIARQLRIRDAGGLIVIDFIDMDSPRHQREVEERL
KDALKADRARVQIGRISRFGLLEMSRQRLRPSLGEATQNVCPRCEGHGHIRSVESLGLST
LRLIEEHAMKENTGQVLVQAPPSVANFMLNEKRASVVEIELRHNVHVVVVADDKLETPHL
EITRIREADMGEHSKPSYERTTPVVATALPKMGQMLGSGEQPLVTGVVPSSPAPIRDDED
ETVAAPAQVARPAAPAAPTGGFFSRLFSGLFGGGAKPEPAAPAPAPSSRREESRSGGRND
RNDRNRRGEGRGEGRGEGRGKGEQRQGRKDKGEGQGRQGQQQPKPKQEKGQQQRQGEDKN
RQKDGQQEKGGRQGGRQDQQDKAQANENRRQQQPRNERQPQGEKVEKADKVEKAANQAQP
QRTPAEKPVAPVAAVVAEEKLLTTPGADQPLTTTDAGSEAAVTANGAEAADANREAGEGG
QRRRRGRRGGRRRRRQEDGAPAGSLEAGADGAELDDEDGDDDIGTGRDSASVPPILDTPE
AAANAAKLSPPRTEATSPAEPGDEEHVPSALTLPALPKLPPIPGNAAQPAHAVASHETVT
PADSVEVRTSERRQTESDAPLKTAPAAPAPVPAVEPSESALDAPARGVASDDVAAAPAPA
IEPVKAEAIPAVPPVLAPKADDAAPAEVAAPPAPEKTVVEAEKPVEAVKAAEPVVTAPEA
EAPKAAPAPAPVPAPVAEPTPTPAVVAAPPAPVTPAAAPAPTATAPVAPPAEPATPKSPE
ASNVSHVSHTPATPGEQPAWTPPTQGDLLTRPRQEQPQDGQH
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtatgttgatcaacgcgactcagcgcgaagagttgcgcgtggccatcgtcgat
ggccagaatctttacgatctcgacatcgaaatcccgtcccgggaacagaaaaaggccaat
atctacaaaggccgcatcacccgcgtcgaaccctccctggaagcctgcttcgtcgattat
ggcgccgagcgccatggcttcctgccgctgaaggaaatctcccgcgattacttcaatccg
aacgcggaaggtaaatcaaatatccgcgagctcctgaaggaaggccaggagatcatcgtc
caggtcgagaaggaagaacgcggtaacaagggcgcggccctcaccacgttcatcagcctc
gctggccgttacatggtgctgatgccgaacaacccgcgagcgggtggtgtttcgcgtcgc
atcgaaggcgaagaccgccaggcactcaaggaagccctcgagcacctctcggtgcccgat
gagatgggccttatcgtgcgcaccgccggcatgggccgcgacgccgaagaactccagtgg
gatctcgattacctgctgcagctgtggaagtcgatctccgccgccgccacctcgcagaag
gcgccgttcctgatttaccaggaatcgaagctgttcatccgcgcgctgcgcgattacctg
cgtaacgacattggcgaaatcctcatcgacgaagagtcgctgttcaaggatgcccgcgat
ttcgtccagcaggtgatgccgaacaacctgcgcaagctcaagctgtaccaggacccgacc
ccgctgttctcgcgctatcagatcgagacccagatcgagtccattttcgagcgcaatgtc
cgcctcccctccggcggctccatcgttatcgaccagaccgaagcgctgaccgccatcgac
atcaactcgtcgaaggccaccaagggcagcgatatcgaagagacggcgttcaacaccaac
ctcgaagccgccaccgagatcgcccgccagctgcgcatccgcgatgccggcggcctcatc
gtcatcgacttcatcgatatggacagcccgcgccaccagcgcgaggtggaagagcgcctg
aaggacgccctcaaggcggaccgcgcccgtgtccagatcggccgcatcagccgcttcggc
ctgctcgagatgtcgcgccagcgcctgcgcccgagcctcggcgaagccacccagaacgtc
tgcccgcgttgcgaaggccacggccatatccgcagcgtcgagtcgctgggcctttcgacc
ctccgtctcatcgaagagcacgcgatgaaggaaaacaccgggcaggtcctggtgcaggca
ccgccgtcggtcgccaacttcatgctcaacgagaagcgcgccagcgtggtcgagatcgag
ctgcgccacaacgtccacgtcgtggtcgtggccgacgacaagctggaaaccccgcacctc
gagatcacccgcatccgcgaagcggacatgggcgagcacagcaagccgagctacgagcgc
accaccccggtggtcgcgacggccctgccgaagatgggccagatgctgggcagcggcgag
cagccgctcgtcaccggcgtcgtcccgtcctcgcccgccccgatccgcgacgacgaagac
gaaaccgtcgccgcgccggcccaggtggcccgcccggccgctccggccgcgcccaccggc
ggcttcttctcgcgcctgttcagcggtctgtttggcggtggtgccaagccggaacctgct
gcaccggcacctgccccgtcgtcgcgccgcgaagagtcgcgctccggtggtcgtaatgac
cgtaacgatcgcaaccgtcgtggcgaaggccgcggtgagggtcgtggcgaaggccgtggc
aagggcgagcagcgccagggccgcaaggacaagggcgaaggccagggccgccagggccag
cagcagcccaagccgaagcaggaaaagggtcagcagcagcgccagggcgaagacaagaat
cgccagaaggatggccagcaggagaagggtggccgccagggcggtcgccaggatcagcag
gacaaggcgcaggccaacgagaaccgccgccagcagcagccgcgcaacgagcgccagccg
cagggcgagaaggtagagaaggccgataaggtcgagaaggcagccaaccaggctcagccg
cagcgcaccccggccgagaagccggtggcgccggtcgccgccgtggtcgccgaagagaag
ctgttgaccacacctggcgcagaccagccgctcaccacgaccgacgctggcagcgaagcc
gccgtcaccgctaatggtgccgaagcagccgatgccaaccgcgaagcaggcgaaggcggc
cagcgccgtcgtcgcggccgccgtggtggccgccgccgtcgtcgccaggaagacggcgca
ccggcaggtagcctcgaagccggtgccgatggcgccgagctcgacgacgaggatggcgat
gatgacatcggcacgggccgcgacagcgccagcgtgccgccgatcctcgacacgccggaa
gcagccgccaacgctgcgaagctgagcccgccgcgcaccgaggccacgagccccgctgag
ccgggcgatgaagaacacgtcccgtcggcactcaccctgcccgcgctgccgaagctgccg
cccatcccgggcaacgccgcgcagccggcgcacgccgtggcatcgcacgaaaccgtcacc
ccggccgattcggtcgaggtgcggaccagcgaacgccgccaaacggaatcggacgccccg
ctgaagacggccccggccgcaccggcaccggtcccggccgtcgagccgtccgagtcggcg
ctcgacgctccggcacgtggcgtcgcttccgatgatgtcgccgccgcgcccgcgccggcc
atcgaaccggtgaaggcggaagcgatcccggctgtcccgccggtgctcgcgccgaaggct
gacgacgcggctccggctgaggtcgccgccccgccggcccccgagaagacggtggttgaa
gccgaaaagcccgtcgaggccgtgaaggctgccgagccggtcgtaacggctcctgaggct
gaagcacctaaggctgccccggccccggccccggtaccggcacctgtcgccgaaccgacg
ccgacgccagccgtggtcgccgcaccgcctgctcccgtgaccccggctgccgctccggca
ccgacggcaacggcgccggtggcaccccctgccgagccggccacgcccaagtcgccggaa
gcgtcgaacgtctcgcacgtctcgcacaccccggccacgcccggcgagcagcctgcctgg
acgccgccgacccagggtgacctgctgacgcggccccgccaggagcagccgcaggacggc
cagcactaa
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