Luteibacter aegosomaticola: L2Y96_22145
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Entry
L2Y96_22145 CDS
T09073
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
laes
Luteibacter aegosomaticola
Pathway
laes03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
laes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L2Y96_22145 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laes03400
]
L2Y96_22145 (ligD)
Enzymes [BR:
laes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L2Y96_22145 (ligD)
DNA repair and recombination proteins [BR:
laes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L2Y96_22145 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UPG90045
LinkDB
All DBs
Position
4927144..4929096
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AA seq
650 aa
AA seq
DB search
MKPRVSRTRQASNRSLADAAAALAGAKKGKPDPAFFAPQLARLRETPPQGDRWLHEVKWD
GYRILAGIAKGEVRLWSRNALPWNDRIPDIVRAIEALGLDSARLDGELIALDAHGRSDFN
ALQKTLAGEADAPLAYMLFDMPFLQGYDLSRMALVERKGLLERLLKGVKTPLHFSAHSVG
DGDDAFAAAMRQQLEGIVSKRIDGAYHSGRNDDWLKIKRLESDEFAVVGYTAAKGTRLSF
GSLLLARPGTKGRWIYVGRVGTGFTDAMLRQLGKSLARGGQKKPPIPLDGIDPLLHGALW
VEPTVVAEVYFRGIGNHHLLRQPSLKALRADKSPGDLRDSDRPRTTAVRTKTRKTPVAAD
AITITHPERVVYPDDGITKQEVADYYKAVMPWILPPIADRPMPMLRCPGGIGEPCFFQKH
MINGLHHVGSAKLKEESGAQAVYLYPKDADGLLELVQFGAIEFHPWGSHVKTPDAADRVI
FDLDPGDGVAWARVVAGARMIRDFLKQIGLTSFVRTTGGKGLHVVVPLAPAADWDTVRTF
ARGFAEAMAEAHSAEFVATAAKKVRSGKIYLDYLRNGRGATAVASYSLRARAGAPVAVPL
RWEDLGKLTSGADFTIHSVPKRLARLKKDPWEGIDSLRQGLDDVMSQLGL
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccagggtttcccggaccaggcaagcctccaaccggtcgctcgccgacgcggcg
gccgcactcgcgggagcgaaaaagggcaagcccgatccagcgttcttcgcaccacagctt
gcacgcctgcgcgagacgccaccgcagggcgatcgctggctgcacgaggtgaagtgggat
ggttaccgcatcctggcaggcatcgcgaagggcgaggtccgactctggtcgcgcaacgcc
ctgccctggaacgatcgcatcccggacatcgtgcgagccatcgaggccttgggtctcgac
agcgcacgactggatggcgaactgatcgcgctcgatgcgcacggccgcagcgatttcaat
gcactgcagaaaacattggccggcgaagcagacgcgccgctcgcttacatgcttttcgac
atgcctttcctgcagggctacgacctctcgcgcatggcgttggtcgaacgcaagggactc
ctcgagcgcttgcttaaaggcgtgaagacgccgctccacttcagcgcccacagcgtcggc
gacggtgatgacgccttcgcggccgccatgcgtcaacagctggaaggcatcgtgtccaag
cgcatcgacggtgcgtatcacagcggccgcaacgatgactggttgaagatcaagcgactc
gagtccgatgagttcgcggtggtcggttatacggccgcgaaaggcacgcgcctgtcgttc
ggctcgctgcttttggcgaggccgggcacaaaaggccgatggatctatgtgggccgcgtg
ggcacgggtttcaccgacgccatgctgcgccagctcggcaaatcgctagccaggggtggc
cagaagaagccgcccatcccgctcgacggtatcgatcccctgctccacggcgcgctatgg
gtcgagcctaccgtggtcgccgaggtgtattttcgcggcatcggcaaccaccacctgctg
cggcagccgagcctgaaagcgctgcgcgcggataaatcccctggtgacctgcgcgatagc
gaccgtccccgcactaccgccgtacgcaccaagacgaggaagacgcccgtggctgccgat
gcgatcaccatcacccaccccgagcgggtcgtgtacccggacgatggcatcaccaaacaa
gaggtcgcggactactacaaggcggtgatgccgtggatcctgccaccgatcgccgaccgg
cccatgcccatgctgcgctgtcctgggggcatcggtgagccgtgcttcttccagaagcac
atgatcaacgggctgcaccatgtcggttcggcaaaattgaaggaggaaagcggcgcgcag
gccgtctacctctacccgaaggatgccgatggattgttggaactggtgcaattcggcgcg
atcgaattccacccgtggggttcgcacgtcaagacgccggatgccgccgaccgggtgatt
ttcgacctggatccgggcgacggcgtcgcctgggctcgcgtggtggcgggggcccggatg
attagggattttctcaagcagataggcctaacctccttcgtgcgtacgacgggcggcaag
gggctccatgtcgtggtgccactcgcacccgctgccgactgggataccgtgcgcaccttt
gcacgcgggttcgcggaggccatggctgaggcacactctgccgaatttgtcgccacagcg
gcaaagaaggtgcgcagcggcaagatttacctcgactacctgcgcaacggccggggcgcg
accgccgtggcgtcgtattcgctgcgggctcgcgctggcgcgccggtggctgtaccactg
cgctgggaagacctcggcaagctcacctccggcgcggacttcaccatccatagcgtgccc
aagcgtctggcacgcttgaaaaaggacccctgggaggggatcgactcgctgcgccagggc
ctggatgacgtgatgtcgcagctgggcctgtag
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