Lactobacillus acidophilus FSI4: SD55_0475
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Entry
SD55_0475 CDS
T03681
Symbol
rnr
Name
(GenBank) exoribonuclease R (RNase R)
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
laf
Lactobacillus acidophilus FSI4
Pathway
laf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD55_0475 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laf03019
]
SD55_0475 (rnr)
03016 Transfer RNA biogenesis [BR:
laf03016
]
SD55_0475 (rnr)
Enzymes [BR:
laf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SD55_0475 (rnr)
Messenger RNA biogenesis [BR:
laf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SD55_0475 (rnr)
Transfer RNA biogenesis [BR:
laf03016
]
Prokaryotic type
tRNA degradation factors
SD55_0475 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
GRP
BRINP
Motif
Other DBs
NCBI-ProteinID:
AJP45910
LinkDB
All DBs
Position
431104..433452
Genome browser
AA seq
782 aa
AA seq
DB search
MAQNEKILAGVLEIFRHNPQKQYRVDQIEREARRERLGNFTELIKALSFLEHEKKIITDG
KGQYQLAKENTIVEGIFKANDKGFGFVKLDDEEADDVFVAADYTKYAIDGDRVKVKITAG
GNPWNGKGPEGQVEEILERGIDSLVGEFHPLTDEQKKVSHFIGYALSNNKKLHKYRVYLS
ENGLIPQMGDMVKVSIKDYPEEDYPESMTGAVINIIGNKNDPGVDIMSIVSAHDVRTEWP
EDAMKQANAIPDHVTEGDKKGRVDITDQPAVTIDGDDSKDFDDAVVVWKLPNGNYHLGVH
IADVSHYVTENTPLNDEAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVERLVLSCDME
ITPEGKRVGYKIYPSVMRSHGRMTYNKVNQTLKGDMDGLEDKYVKLRPMLEDMADLHTAL
YKQRHKRGAIDFEEPEAKIVVDDQGKPTDIVLHERGTAEKMIESFMLMANETVAEDFYKK
QVPFLYRVHETPDAERIKTFFEFCSAFGLNVHADPNDIKPLDLQKVVSKTTGTPEEAVVQ
MMMLRSLKQARYSEDALGHFGLAAEYYTHFTSPIRRYSDLMVHRMIHAYQEKGMSEETQK
HFESYLPDVAEQTSTQERRSIDTEREVNDLKMTEYMADQVGQHFDAVVASVTSFGMFIQL
PNTVEGLIHISNLTDDFYSFNEKSMTLTGRGTHKQYKVGMPIKVTLINANVEQHQLDFEV
YDPNAPKKKHNDRGMNNRKRGNRGFHNDHGHRGGGNYNSRGNRRGHEHVTSKNRKGHRSF
KH
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaaacgaaaaaattttggccggtgttttagaaatttttcgccataatccacaa
aaacaatatcgtgtagatcaaattgaacgtgaagcacgtcgtgaaagattaggtaatttc
acagaattgattaaagctctttcttttttagagcatgaaaaaaagattattactgatgga
aaaggacaatatcaattagcaaaagaaaacactatcgttgaaggaatttttaaggctaat
gataaagggttcggctttgttaaattagatgatgaagaagcagatgatgtttttgtagca
gctgattatacaaagtatgctattgatggtgaccgcgtaaaagtcaagattactgcgggc
ggtaatccatggaatggaaaaggaccagaaggccaagttgaagaaattctagaacgtgga
attgatagtttagtcggagaattccatccattaactgatgaacagaaaaaagttagtcat
ttcattggttatgcattgagtaacaacaaaaaattacataaatatcgtgtatacctttca
gaaaatggtttgatccctcaaatgggcgatatggttaaggtatcaattaaggattatcca
gaagaagattatcctgaatcaatgaccggtgcagttattaatatcattggtaataagaat
gatcctggcgtagatattatgtctattgtttcagctcatgatgttagaactgaatggcca
gaagatgctatgaaacaagctaatgcaattcctgaccatgttactgaaggtgataaaaaa
ggtcgagtagatattacggatcaaccagcagttactattgatggggatgattctaaagac
tttgatgacgcagtggttgtatggaaattgcctaatggtaactatcatttaggtgttcat
attgcggatgtttctcattatgtaacagaaaatacacctttgaatgatgaggcttttgca
cgtggaaatagtacatacttagtagatcgcgttattccaatgctcccattcagactttca
aatggtatttgttcattaaatgagggagtagaacgtcttgttttatcttgtgatatggaa
attaccccagaaggtaaaagagtaggctacaagatttatccatctgttatgcgctcacat
ggccgtatgacatataataaagttaaccaaacacttaagggtgatatggatggcttagaa
gataaatatgtaaaattgcgaccaatgcttgaagatatggcagatttacatactgctttg
tataaacaacgccataagcgtggtgcaattgactttgaagagccagaagcaaagatagtt
gttgatgatcaaggcaaaccaacagatattgtgttgcatgaacgcggtactgctgaaaag
atgattgaatcattcatgttaatggctaatgagacggtagcagaagatttctataagaag
caggttccatttttataccgtgttcacgaaacgcctgatgctgaaagaattaagactttc
tttgaattttgtagtgcgtttggtttgaatgttcatgcagatcccaatgatattaagcca
cttgatttgcaaaaagtagtctctaagacaactggtactccagaagaagccgttgtccaa
atgatgatgcttcgtagtttaaagcaagctcgttattcagaagatgcattgggccacttt
ggtttggcagcagagtattatactcactttacctccccaattagacgttactcagattta
atggttcacagaatgattcatgcatatcaagaaaaagggatgagtgaagaaactcaaaag
cactttgaaagttacttaccagatgttgcagagcaaacctcaactcaagaaagacgttca
attgatacggaacgtgaagtaaatgatttgaagatgactgaatatatggcagatcaagtg
ggtcaacattttgatgctgttgttgcttcagtcactagttttggtatgttcattcaattg
ccaaatactgttgaaggtttaattcatatttctaatttaactgacgatttctatagtttt
aatgagaaatcaatgactttaacgggtcggggaactcataaacaatacaaggtagggatg
ccaattaaggttaccctaattaatgctaatgttgaacagcatcaacttgatttcgaagtt
tatgatccgaatgctcctaagaaaaagcataatgatcgtggaatgaataatcgtaaacga
ggtaatcgaggatttcataatgatcatggtcaccgtggtggtggaaattataatagccgt
ggcaatcgtcgtggacatgaacatgttactagtaaaaacagaaaaggtcatagaagtttt
aaacattag
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