Lactobacillus acidophilus FSI4: SD55_1015
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Entry
SD55_1015 CDS
T03681
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
laf
Lactobacillus acidophilus FSI4
Pathway
laf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD55_1015 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laf03019
]
SD55_1015 (recQ)
03400 DNA repair and recombination proteins [BR:
laf03400
]
SD55_1015 (recQ)
Enzymes [BR:
laf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SD55_1015 (recQ)
Messenger RNA biogenesis [BR:
laf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SD55_1015 (recQ)
DNA repair and recombination proteins [BR:
laf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SD55_1015 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJP46407
LinkDB
All DBs
Position
976352..978124
Genome browser
AA seq
590 aa
AA seq
DB search
MNPEKVLKQTFGYDSFRPGQKRVIDLVLNRQNVLAVMPTGAGKSLCYQVPALMNSGITLV
ISPLISLMKDQIDALKQNGINAAALNSATSQEKVNPILRQAYEGKIKLIYITPERLAMDY
FRYQLNFLDIALVAVDEAHCISQWGHDFRPAYRRIYEGITSLKSNPNVLALTATATPAVQ
DDISEQLNIPKKNTIITSFTRPNLSFKVVAFPQNTPLYIAKYIKLHPDHAGIIYTNTRKK
VEGLTNYLAKNNISVGAYHGGMENKEREDVQEAFQFDRFQVIVATNAFGMGIDKSNVRFV
IHASSARNIESYYQEAGRAGRDGEESEAIMIYHSGDLRQYRYFIDKSNADEKYRELQYQK
LQSITDYANTGECLQRYIVRYFGQDCEPCGKCSNCLNQDDLVDITSDAQKVIAMIYELDG
RFGKNIVAQCLTGSDNQKMRELNAKQYKHFGSLKLNQKATISLIDYLIASKYLEVEGTKY
PLVHVTNRGWDVLDGKTIVKRRIAKVQKSIRIFDHNEDANLFELLRKKRWEIAQKQKVPA
FMIFSDRSLHDMAKIKPQNKTELLQVTGIGKAKMERYGDIVINAISEYEN
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgaatccagaaaaagtattaaaacaaacctttggttatgatagttttcgtccaggtcaa
aagagagttatcgatttagttttaaatagacaaaatgtattagcagtaatgccgacaggt
gcagggaaatcactttgctatcaagttccagcactgatgaattcagggattactttagtt
atttcacctttgatttcgttgatgaaagatcaaatagatgcattaaagcaaaatgggatt
aatgcggcagctttaaattcagcaacatcacaagaaaaagttaatcctattttgcgacag
gcttatgaaggaaagatcaagttaatctacatcacacctgaacggttggcaatggattat
ttcagatatcagctaaattttttagatattgctttggtagcagtggatgaggctcactgt
atttcgcaatggggacatgattttcgtccggcttatcggcgaatatatgaagggattact
tctttaaaaagtaatcccaatgttttagcattaacagctactgctacacccgctgttcaa
gatgatatcagtgaacaattaaatattcctaaaaaaaatactataataacttcttttaca
aggccaaacttgagctttaaagtggtcgctttccctcaaaatacaccactgtatattgct
aaatatattaagttgcatcctgatcatgcaggaattatctatacaaatacacgcaaaaaa
gtggaaggattaactaattatttagctaaaaataatatttcagttggagcataccatggc
ggaatggaaaataaagaacgagaagatgttcaagaggcttttcaatttgatcgttttcaa
gtgatagtagctaccaatgcttttggaatgggaattgataaaagtaatgttcgctttgtt
attcatgcttcaagtgctagaaatattgagagttactatcaagaagcaggtcgtgctggt
cgagatggtgaggaaagtgaagcaattatgatttatcactcaggtgacttgagacaatat
cgctattttatagataaatcaaacgctgatgaaaaatatcgtgaattacagtatcaaaaa
ttacagtctataactgattatgctaataccggtgaatgtttacaaagatatattgtccgt
tattttggacaagattgtgagccatgtggtaaatgctctaattgtttaaatcaagatgat
ttagtggatattacttccgatgcacaaaaggtaattgccatgatttatgaactggatgga
cgctttggtaaaaatattgtagcgcaatgtttaactggttcagataatcaaaagatgaga
gaacttaatgctaaacaatataaacattttggtagtttgaaattaaatcaaaaggcaaca
attagtttaattgattatttaattgcttctaaatatttagaagtagaggggaccaaatat
ccattagttcatgtaactaatcgaggttgggatgtacttgatggtaaaactattgtaaaa
agaagaattgctaaggtgcaaaaaagtatacgtatttttgatcataatgaagatgcaaat
ctgtttgaattattgagaaaaaagcggtgggagattgctcaaaaacaaaaagtacctgct
ttcatgattttttcggatcgtagtttacatgatatggccaaaataaaaccacagaataag
actgaacttttacaggtaacgggtataggaaaagctaaaatggaaagatatggtgatatt
gtaataaatgctataagtgaatatgaaaattaa
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