Lactobacillus acidophilus FSI4: SD55_1017
Help
Entry
SD55_1017 CDS
T03681
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
laf
Lactobacillus acidophilus FSI4
Pathway
laf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
laf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SD55_1017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laf03400
]
SD55_1017
DNA repair and recombination proteins [BR:
laf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SD55_1017
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SD55_1017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
AAA_21
AAA_15
nSTAND1
DnaJ_CXXCXGXG
AAA_29
RsgA_GTPase
DUF463
cobW
nSTAND3
DUF4350
Motif
Other DBs
NCBI-ProteinID:
AJP46409
LinkDB
All DBs
Position
978734..981256
Genome browser
AA seq
840 aa
AA seq
DB search
MTIPNQIEVRGGRVHNLKNIDVDIPLNKFVAISGLSGSGKSSLAMGILYEEGSRRYLDAL
STYMRRRIKQGSQVDVTSVKHIPSALALRQRPSVPNERATVGTMSETFNILRLIFSRLGS
PVCPNGHRLKPSLKIAESMSLSGEKMGQLTCPVCGENFYAPSAEQFAFNSEGACIECGGT
GKVRQLDEDKLIADENLSIKEGAVASWSLPGRNFMPNVAEYAGVRIDIPYKDLTAKEKDF
VLNGPEKKYKMDFLSGTGRVFHDFNVLYENAHQAVYRSAQTSKSERAQKRIAEFFTYSIC
PVCHGSRLKPELLKQWVGNSNINQVSQKQLGELPTWADQIQAELPANMHKMAHALFAEFL
DNLQPLLDLGLDYLTMARNGNTLSTGELQRIQLARTLRTETTGVLYVLDEPSIGLHPANV
AGLIKVLRKLVNQGNSLVVVDHNVDIIAAADEVIEIGPGSGEKGGQILDHGPISTIKNDQ
QSLIRPYLDGSAQLLARKIANQINNDGISFEVKNYFNLKDIKANIPLNQLTAVTGFSGAG
KTSLILDSLVPAIKAESKNEKLPKQIINFSAPVSNVVGVDASPIGKSTRSTVATYTSIMN
NLRRLFASQPLAKEKHFTPTYFSYNNKQGACPTCGGTGIVTLDIQFLPDMQQVCPTCHGD
RYNQKVQQVKWQGMSIVDILNLDIEGALPLFKRVPKIERELKLLKEVGLDYLHLGESTPT
LSGGEAQRLKLVTHLSHKQSDTLFVFDEPTIGLHPLDVKTLVKVMQKLLDQGATLITITH
DLNLIANCDYIIDLGPQGGNNGGQIVASGRVMDLIKDPHSLTTQYLAVYCGKFDMFKDNN
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgacaattccgaatcaaattgaagtacgtggcggtcgtgttcataatttaaaaaatatt
gatgttgatattccattaaataaattcgtagcaatttctggattatctggttctggtaaa
tcttctttagcaatggggattttgtatgaagaaggatcacggcgatatttggatgcgtta
tctacatatatgcgcagaagaattaaacaaggaagtcaggtggatgtaacctccgttaag
catatcccatctgctctagcattacgtcaaagaccaagtgttcctaatgagcgagccact
gtaggaacaatgagcgaaactttcaatatattacgtcttattttttcacggttgggctca
cctgtttgtcctaatgggcacagattaaagcccagtttaaaaattgcggaatcaatgagt
ctgtcaggtgaaaaaatgggtcagttaacttgtcctgtatgtggcgaaaatttttatgct
ccaagtgcagaacagtttgcatttaattctgagggtgcatgtatagagtgtggtgggact
ggtaaagttcgccaacttgatgaagataaacttatcgctgatgaaaatctttctattaaa
gagggggctgttgcatcatggagtttacctggcagaaactttatgcctaatgttgctgaa
tatgctggggttagaattgatattccgtataaagatctgactgctaaagaaaaagatttt
gtcttaaatgggccagagaaaaaatataaaatggatttcttatctggtacagggcgggta
tttcatgattttaacgtgctttatgaaaatgcacatcaagctgtttatcgttctgcacaa
acaagtaaaagtgaacgtgcccaaaaaagaattgcagaattttttacgtattcaatttgt
cctgtttgtcatggaagtagattaaagccagaattgttaaagcaatgggtaggaaatagt
aacatcaatcaagtttctcaaaaacaattaggtgagttacctacttgggcagatcaaatt
caagcagagttacccgctaatatgcataaaatggcacatgccttatttgcagaattttta
gataatcttcaaccattattagatttaggtttagattatctaactatggctagaaatgga
aatactttatctactggcgaacttcaaaggattcaattggcgagaaccttacgtacagaa
acaactggagttttatatgtacttgatgagccatcaataggccttcatccagctaatgtt
gcaggactaattaaggtgctacgtaagttagtaaatcaaggaaattctctagtagttgtt
gatcataatgtagatattattgcagctgctgatgaggtaattgaaataggaccaggttct
ggagaaaagggcggtcaaattcttgatcatggaccaataagtactatcaagaatgatcaa
cagtctttaattcgaccatatcttgatggtagtgctcagcttcttgccagaaaaatagct
aatcaaattaataatgatggcatttcatttgaagtcaaaaattattttaatttaaaagat
attaaagcaaatataccgttaaatcaattgactgcagtaacgggtttttctggtgcaggt
aaaacttctttaattttggatagtttagtacccgctattaaagccgaaagtaaaaatgaa
aagttacctaaacaaatcattaatttttctgcacctgtttcaaatgtggttggtgttgat
gcatccccgattggtaagagtacccgttcaactgtagctacgtatacttcaattatgaat
aacttgcggcgtttgtttgcaagtcagccactagctaaagagaaacattttactccaact
tatttttcatataataacaagcaaggagcatgtccaacttgtggtgggacgggaattgtt
acattagatattcaatttttgcctgatatgcaacaggtttgcccaacttgtcatggtgat
cgttataatcaaaaagtgcagcaagttaaatggcaggggatgtctattgtagacatttta
aatttagatattgaaggggcattacctttatttaaaagggttcctaagattgaacgtgaa
ttaaaattattaaaagaagtgggactagattatttacatctaggtgaaagtactccgact
ttatctggtggagaagctcagcgtttaaaattagttacacatttgagtcacaaacaatca
gatactttatttgtttttgatgaaccaacaattggtcttcatccattagatgttaagaca
ttagttaaagtgatgcagaagttgcttgatcagggtgcaactttgattacgattacacac
gatttaaatttaattgctaattgcgattatattattgatttgggaccacaaggtggtaat
aatggtggtcaaattgtagcaagtggtagagttatggatttgattaaagatccacatagt
ttaacaacacaatatctagctgtttattgcggaaaatttgatatgtttaaagataataat
tga
DBGET
integrated database retrieval system
