Lactobacillus acidophilus FSI4: SD55_1239
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Entry
SD55_1239 CDS
T03681
Symbol
recJ
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
laf
Lactobacillus acidophilus FSI4
Pathway
laf03410
Base excision repair
laf03430
Mismatch repair
laf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
laf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SD55_1239 (recJ)
03430 Mismatch repair
SD55_1239 (recJ)
03440 Homologous recombination
SD55_1239 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laf03400
]
SD55_1239 (recJ)
DNA repair and recombination proteins [BR:
laf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SD55_1239 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SD55_1239 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SD55_1239 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
ssDNA-exonuc_C
RecJ_OB
DHHA1
DUF5759
Tudor_FRX1
Motif
Other DBs
NCBI-ProteinID:
AJP46596
LinkDB
All DBs
Position
complement(1218770..1221043)
Genome browser
AA seq
757 aa
AA seq
DB search
MKWQKRITKELDSDLVDKYQLSSLSAQLFALRDINTDEKLDFWFNATEENLANPLLMHDM
EKAVERINQAIDNGEKITIYGDYDADGITATAIMTETLSILGADVHYFIPDRFKDGYGPN
IERYKEIVADGTKLIITVDNGVTGIDEVKYAKENGVDTIITDHHTFQEKVPDSYAVVHCN
YPGQKYPFDDYCGAGVAYTICRELMQDTMPELLDLAMIGTLGDMVKVTGEGHIIVKRGLE
ILNQTTRPGLQALIKNAGLTLGSINETDVGFNICPRLNAVGRLANANLAVELLLSDDDIA
AQKIADQIEELNNQRKELTTDVYEKCMSIIRENSWQKQNTLVLYDPEFHEGVLGLVANKI
VEKTHKPTIVLTKNDVGEVKGSGRAFNGFNLFNALNPLKDELFTKFGGHDFACGLSMQEN
KIDTLRQKLESSYQVNGESESKGYDLELPLNDLTPQTLAQINQVGPFGTGDPQPIFSISD
PTITQFYKIGKDKNHVKLTASKKGGSLAIVGFNKDFLNNNLLPFISKIFIQLTLNTYRKQ
ISLQGIIEGIEFASPKLAVPTPVIDLRNEKFVMGFADRYLLFDKKNIPIVKNRLQISDDK
ISLVKDYDQSGETVALLDVPRNQIELNEALEKNYQQIYLRFLLDQLPVEHIPAKGYFGRV
LKYIYAHPTLKPDDYRTVAPYLGLDYDSVLFILRVFFELGFVKLHDGKLIGEENPKKQPL
TSSKYLMATESQIKFVDQLRNMPTQKLITYVNNHSNN
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggcaaaaaagaatcactaaagaattagattctgatttagtagataagtatcag
cttagctcgctttcggcacaattatttgctttacgtgatattaatacagatgagaagctg
gatttttggtttaacgcaacagaagaaaatttggctaatccattattgatgcatgacatg
gaaaaggcggtagaacgtattaatcaagcaattgataatggtgaaaaaattacgatatat
ggtgattatgatgctgatggaattacagctactgccattatgactgaaacactaagcatt
ttaggagcagatgtacattattttattccagatcgttttaaagacggctatggacctaat
attgaacgatataaggaaatagtagctgatggtactaagttaattattactgtagataac
ggtgtaacaggaatcgatgaagttaaatatgccaaagaaaatggtgtagatacaattatt
acggaccaccatacttttcaggaaaaagttccagattcatatgctgttgttcattgtaat
tatcctggtcagaaatatccttttgatgattattgtggtgctggagttgcctatactatt
tgccgtgaattaatgcaagatactatgccagaattacttgatttagcgatgattggtact
ctcggcgatatggttaaagttacaggcgaaggtcatatcatcgttaaacgtggtcttgag
attcttaatcaaaccactagaccagggttacaagcattaataaaaaatgcaggtttaact
ttgggttcgattaatgaaactgatgtcggttttaatatttgtccacgattgaatgccgta
ggccgcttagctaatgcaaatttggcggttgaacttttattaagtgacgatgatattgca
gcccaaaagatagctgatcaaattgaagaattaaacaatcagcgaaaagaattaactaca
gacgtatatgaaaaatgtatgtcaattatccgtgaaaatagttggcaaaaacaaaatacg
cttgtattgtatgatcctgagtttcatgaaggtgtattaggattagttgctaataaaata
gttgaaaaaacacataaacctacgattgttttgactaagaatgatgtgggggaagttaaa
ggatccggacgtgcattcaatggttttaatttatttaatgcacttaatccattgaaagat
gaattatttactaaatttggcgggcatgattttgcttgtggattatctatgcaagaaaat
aaaattgacactttgcgtcaaaaactggaatctagttatcaagtaaatggggagtcagaa
agtaaaggatacgatttggagcttcctttaaacgacttaactccacaaactttagcacaa
attaatcaggtgggcccctttggcaccggtgatcctcaaccaatttttagtatttctgat
ccaacaattacacaattttataaaattggtaaagataaaaatcatgttaagttaactgct
tctaaaaagggtggaagtttagcaatagttggttttaataaagactttttgaataataat
ttgctgccatttatctctaagatcttcatccaattgacgctaaatacttatcgaaaacaa
atatcattacagggaattatcgaaggaatagagtttgcttcacccaaattagcagtacct
acaccggttattgatttacgaaatgaaaaatttgtaatgggttttgcagatcgttattta
ctttttgacaagaaaaatattccaattgttaaaaatagactgcaaattagtgatgataaa
attagtcttgtaaaggattatgatcagtctggagaaacagtagctttacttgatgtacct
cgtaatcaaatagagctaaatgaagcacttgaaaaaaattatcagcagatttatttgcgt
tttttgttagatcaattgccagtcgaacatattccggctaaaggttatttcggcagagta
ttgaagtatatttatgctcatcctacattaaagccagatgattatcgtaccgtagcccca
tatttagggttagattatgatagtgtattatttatattgcgtgttttctttgaattaggc
tttgttaaactgcatgatggaaaattgattggggaggaaaaccctaagaagcaaccactg
acatcttcaaaatatttaatggcgactgaatcacaaattaaatttgtagatcaattaaga
aatatgccaacacaaaaattaattacatatgttaataatcattcaaataattag
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