Lactobacillus acidophilus FSI4: SD55_1520
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Entry
SD55_1520 CDS
T03681
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
laf
Lactobacillus acidophilus FSI4
Pathway
laf03030
DNA replication
laf03410
Base excision repair
laf03420
Nucleotide excision repair
laf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
laf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SD55_1520 (polA)
03410 Base excision repair
SD55_1520 (polA)
03420 Nucleotide excision repair
SD55_1520 (polA)
03440 Homologous recombination
SD55_1520 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
laf03032
]
SD55_1520 (polA)
03400 DNA repair and recombination proteins [BR:
laf03400
]
SD55_1520 (polA)
Enzymes [BR:
laf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SD55_1520 (polA)
DNA replication proteins [BR:
laf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SD55_1520 (polA)
DNA repair and recombination proteins [BR:
laf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SD55_1520 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SD55_1520 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_5
DUF61
Polysacc_deac_2
HHH_2
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
AJP46865
LinkDB
All DBs
Position
complement(1538453..1541113)
Genome browser
AA seq
886 aa
AA seq
DB search
MADKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAILKQVDPTNIL
VAFDAGKVTFRTAMYKDYKGGRQKTPSELLEQMPVIREMLTDLGITSYELKNYEADDIIG
TLSKMGEDAGYEVTVVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGITPTE
FIDMKALMGDNSDNYPGVEGIGPKTASNLIQKYGSVENLYDHIDDLKKSKRKERLIRDKD
KAFLAKKLAAIDRESPVTVTLEDTIKKDPNYEKLRDLYERLGFRKFLAELNLETAGEDSG
DTENYDYVELTEDNVAELDDLKENEISFYLEMLGDNYHLAPFEGFSLKVGDKVYVSKDIA
LLQEKPLKDILENRKIQKDVFDLKRMTVGLHRLDVIVEGLNYDMLLASYLVNNEKNSNDL
GEIAHLYDEYSIKTDLEVYGKGKKQAIPEDKEFFKHLAAKVCVIEKLKPELLKQLKEHEQ
DDLFETIEIPTARVLAKMEINGIKVEASTLIELQNEFAVKLKELEDKIYKQAGEEFNLNS
PKQLGHILFEKLNLPVLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKG
LLDVIQRDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFS
CDYSQVELRVLAHVSGDQNMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHAKAVNF
GIVYGISDYGLSKNLGISRKRAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRR
RYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHD
ELIFDVPKDELETIKKIVPEIMQSAVKLDVPLIADSGWGHNWYDAK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcagataaaaaattacttctaatagatggaaattcagttgcttttcgtgccttttat
gctttgtatcggcaacttgatcgctttactagtccagatgggttgcacactaatgcgatt
tttacctttaaaaacatgttggatgccattcttaaacaagtagatccaactaatatctta
gttgcttttgatgcgggcaaagttactttcagaactgccatgtataaagactacaagggc
ggcagacagaagacacctagtgaattgcttgaacaaatgcctgttattcgtgaaatgtta
acggatttagggattacaagctatgaactgaagaattatgaagccgacgatattattggt
actttatcaaaaatgggtgaagatgctggctacgaagttacagtagttaccggtgaccgt
gacttaactcaacttgcttcagacaagactacagttttgatcactaaaaatggtgtgggt
gacaccgaagcctacacgcctgaacacatgaaggaagttaacggcataactccaaccgaa
ttcattgatatgaaggctttgatgggtgataactccgataattatcctggtgttgaaggc
attggccctaagacagcttctaatttgattcaaaagtatggttcagtagagaatctttat
gaccacattgacgatttgaagaagtctaagcgtaaagaacgtttaattcgtgataaggat
aaggcatttttagctaaaaaacttgccgctattgaccgtgaatcaccagttacggttact
cttgaagacacgattaaaaaagatccaaattatgaaaaattgcgtgatctttatgaaaga
ttaggctttagaaaatttttagctgaattgaatctagagactgctggtgaagattctggt
gataccgagaattacgattacgttgagctgactgaggataatgttgctgaattagacgac
ttgaaagaaaatgagataagtttttatcttgaaatgcttggcgataattatcatttagca
ccatttgaaggttttagcttgaaggtgggcgataaagtttatgtctcaaaagatattgct
ttattacaagaaaagccacttaaagatatccttgaaaataggaaaattcaaaaggatgtc
tttgacctaaagcggatgactgttggtttacatcgactagacgttattgttgaaggactc
aactatgatatgcttcttgcttcatatttggtcaataatgaaaagaactctaatgactta
ggtgaaattgcccacctttatgatgaatattcaatcaagacggaccttgaagtatatggt
aaaggtaagaaacaagcaatcccagaagataaagaattcttcaagcacttagccgctaaa
gtatgtgtaattgaaaaacttaaaccagagttacttaaacaactcaaagaacatgaacaa
gatgatttgtttgaaaccattgagattccaactgctcgtgttttggctaaaatggaaatt
aatggtatcaaggtggaagcaagtacattaattgaattgcaaaatgaatttgccgttaaa
ttaaaggaacttgaagacaaaatttataaacaagctggcgaagaattcaatttaaattct
cctaagcaattaggtcatattttatttgaaaaattgaatttaccagtattgaaaaagaca
aagacaggttactcaacttccgttgaagtccttgatcaattaaaaacacagagtccaatc
gtgagcgagattttggattatcgtcaaattgccaaaattcaatctacttatgttaaggga
ttacttgatgtaattcaacgagatggtcgtgttcacacccgttatctgcaaactttaaca
gctactggacgtttatctagtgttgatcctaacttgcagaatatccctactcgtacagaa
gagggtaagcaaattagaaaggcttttgtacctagtgaacctgatggctatatcttttct
tgcgactattcacaagttgaacttcgtgttttagcccatgtttcaggtgatcaaaacatg
caagaagccttcaagactggctatgacattcacgctcataccgcaatgaggattttccat
ttggactcaccagatgaagtaacgccacttatgcgtcgtcacgctaaggccgttaacttc
ggtatcgtttacggaatttcagattatggtttgtcaaagaatttaggcatttctagaaag
cgtgccaaagaatttattgataattactttgaacaatatcctcaaatcaaggactatatg
gataaggcagtccaagaagcacgtgaaaagggctatgccgaaactattatgcatagacgt
agatatttgccagatatccatgctaaaaaattcactgtccgttcatttgcggaaagaaca
gcaattaattcaccaattcaagggtctgcggccgatattattaagattgcgatgattaat
atgcaaaagaaacttgatgaattgcatcttaaaactaaaatggtaattcaggttcacgac
gaattaatttttgatgttccaaaagatgaacttgaaacaattaagaagattgttccagaa
ataatgcaatcagcagttaaattggatgttcctttaattgccgattcaggttggggacac
aattggtatgatgcaaagtag
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integrated database retrieval system
