Vibrio anguillarum M3: N175_00030
Help
Entry
N175_00030 CDS
T02823
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lag
Vibrio anguillarum M3
Pathway
lag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N175_00030 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lag03021
]
N175_00030 (rho)
03019 Messenger RNA biogenesis [BR:
lag03019
]
N175_00030 (rho)
Transcription machinery [BR:
lag03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
N175_00030 (rho)
Messenger RNA biogenesis [BR:
lag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
N175_00030 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
S1CSD-TOTE-2
OB_RNB
AAA
DnaB_C
DUF5662
Motif
Other DBs
NCBI-ProteinID:
AGU56318
LinkDB
All DBs
Position
1:complement(6038..7321)
Genome browser
AA seq
427 aa
AA seq
DB search
MTKQVSTTMNLTELKNRPVSDLVKLGESLGLENLARLRKQDIIFSILKAHAKSGEDIFGD
GVLEILQDGFGFLRSADCSYLAGPDDIYVSPSQIRRFNLRTGDSVSGKIRPPKEGERYFA
LLKVNTVNHDKPDNARNKILFENLTPLHANERMIMERGNGSTEDITARVLDLASPIGKGQ
RGLIVAPPKAGKTMLLQNIAQSIANNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTF
DEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAN
ALQRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEK
RVFPAIDFNRSGTRREELLTKPDELQKMWILRKIVHPMSESDAMEFLIDKLAMTKTNDEF
FDAMRRQ
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
ttgactaaacaagtatccaccacaatgaatctaacagaattgaagaacagacctgtgtct
gatcttgtgaaacttggtgagagcctaggcctcgaaaacctagcgcgtctaagaaaacaa
gacatcatcttctccatcctaaaagcgcacgcaaaaagtggtgaagatatatttggtgat
ggggtcttggaaattcttcaagacggttttggtttcttacgtagcgccgactgttcatat
ttagctggccctgatgatatctacgtatcaccaagccaaattcgccgtttcaacttacgc
accggtgactcagtatccggcaaaattcgcccaccaaaagaaggcgaacgttatttcgca
ttgttaaaagttaacaccgttaaccacgacaaaccggataatgcacgtaacaagatttta
tttgagaacttaactccactgcatgccaatgaacgtatgatcatggagcgtggtaatggc
tcgacagaagacattacggcacgagttctagaccttgcctctccgattggtaaaggccag
cgtggtttgattgttgctccgccaaaagcgggcaaaaccatgttgctacaaaatatcgcg
caaagtattgctaacaaccatcctgattgcgtgttgatggtgctactgattgacgaacgt
cctgaagaagtaacggaaatgcaacgccttgtgaaaggcgaagtggttgcttctacgttc
gatgagccagcttctcgtcacgtacaagtggcagaaatggtgatcgaaaaagcaaaacgt
ttggttgagcataagaaagatgtcgttatcctgcttgattccatcacacgtttagctcgc
gcctacaacacagtgatcccgtcatctggcaaagtattgactggtggtgtggatgccaac
gcattgcaacgtcctaagcgctttttcggtgcggctcgtaatgtagaagaaggcggtagt
ttaacgattattgcgacggcactggttgatactggctctaaaatggatgaagttatctac
gaagagtttaaaggtacaggtaacatggaattgcaccttaaccgtaaaattgcggaaaaa
cgtgtcttccctgctatcgatttcaaccgcagcggtactcgtcgtgaagagttgcttact
aaacctgatgagttacaaaaaatgtggattctgcgtaagatcgttcacccaatgagtgaa
agtgacgcaatggaattcttaattgataagctcgcgatgacgaaaactaatgatgagttt
tttgatgcgatgcgccgtcaataa
DBGET
integrated database retrieval system
