Vibrio anguillarum M3: N175_03355
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Entry
N175_03355 CDS
T02823
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
lag
Vibrio anguillarum M3
Pathway
lag02020
Two-component system
lag02040
Flagellar assembly
lag05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
lag00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
N175_03355
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
N175_03355
09142 Cell motility
02040 Flagellar assembly
N175_03355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lag03021
]
N175_03355
Transcription machinery [BR:
lag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
N175_03355
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AGU56850
LinkDB
All DBs
Position
1:complement(685251..686711)
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AA seq
486 aa
AA seq
DB search
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLELQQEIQEALESNPLLDVEEAYEENATAD
VHSINEEKEASAEVLDIEPQDSSDLIEKSEISSELEIDTTWDDVYSANTGSTGIALDDDM
PVYQGETTQTLQDYLLWQLDLTPFSDTDRSIALALIDAIDDYGYLTVSLDDILESFADEN
IELDEIEAVRKRVQQFDPLGVASVNLQDCLLLQLATYPASTPWLEEAKQLLIQHIDLLGN
RDYKLIIKETKLKEEDLREVLQLIQQLDPRPGNNISTEHAEYVVPDVSVYKDHGKWVVTI
NPDSVPKLKINQQYAALGKGNSADSNYIRSNLQEAKWLIKSLESRNETLLKVAKCIVEHQ
RDFFEYGEEAMKPMVLNDVALAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVSTDS
GGECSSTAIRALIKKLVAAENTAKPLSDSKIADLLADQGIQVARRTIAKYRESLGIAPSS
QRKRLL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccctcattacaactgaagctcggccaacaattagcgatgacaccgcagttacaa
caagccattcgtttgttgcaactctccacattggaactccagcaagagatccaagaggct
ctagagtctaatccattattggatgttgaagaggcctatgaagagaatgccaccgctgat
gttcatagcatcaatgaggagaaagaagccagtgctgaggtgttagatattgagccacaa
gacagctctgacttaattgaaaaatccgaaatcagcagcgagcttgagatcgacaccaca
tgggatgatgtctacagcgcgaacacaggcagcacagggatcgcccttgatgatgacatg
cccgtgtaccaaggtgaaacaacgcaaaccctgcaagattatctactgtggcaattagat
ctcacaccgtttagcgacaccgaccgcagcattgctcttgccttgattgacgccatcgat
gactacggttatctcaccgtttctttggatgatattttagaaagctttgccgatgaaaat
atcgagcttgatgaaattgaagccgttcgtaaacgtgttcagcagtttgatcccctcggt
gtggcttcagtcaaccttcaagactgcctgcttttacaattagcgacctaccctgccagt
accccttggttagaagaagctaaacaactgctgatccaacatattgatctgctcggcaat
cgtgactacaagttgatcatcaaagaaaccaagttaaaagaagaagatctgcgagaggta
ttgcagctcattcaacaacttgacccaagaccgggaaataatatttcaacagagcacgcc
gaatacgttgtgcctgacgtgtctgtttacaaagatcacggcaaatgggtggtcacaata
aaccccgacagcgtaccaaaacttaaaataaatcaacaatatgcagcattaggcaaaggt
aacagtgccgatagcaactacattcgcagcaatttgcaagaagcaaaatggcttattaag
agtttagaaagtagaaacgagacactgctcaaagttgccaagtgtattgttgaacatcaa
cgtgatttctttgagtatggtgaagaggcgatgaagccaatggtactcaatgacgttgct
ttagcggtagaaatgcatgaatccaccatatcaagggtgacaacgcagaagtacatgcat
actccgcgtggtattttcgaattgaaatacttcttctccagccatgtcagtaccgacagc
gggggagagtgttcatcgactgcaatacgagcactgattaaaaaactggtggccgctgaa
aatacagccaaaccattaagtgacagtaaaattgcagatctactggctgaccaagggatt
caggtagctagacggacgatagctaaataccgtgaatcgttgggcattgctccatcgagt
cagcgcaaacgcctactgtaa
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