Vibrio anguillarum M3: N175_06505
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Entry
N175_06505 CDS
T02823
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lag
Vibrio anguillarum M3
Pathway
lag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N175_06505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lag03400
]
N175_06505
Enzymes [BR:
lag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N175_06505
DNA repair and recombination proteins [BR:
lag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N175_06505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
Glyco_tran_WecG
UB2H
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
AGU57403
LinkDB
All DBs
Position
1:complement(1338215..1341676)
Genome browser
AA seq
1153 aa
AA seq
DB search
MTTHSLLTLIKPAGAGDKKHIGNLRGASLALAIAELANQHNSHTLLAVPDPQTALKLQHE
IEQFSDAEVALFPDWETLPYDSFSPHQEIISDRIARLYQLPSLKTGITIVPVSTILQRQT
PREFLLQHTLMVKTGDQFSLDKLRLQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGSSD
PYRIDFFDDEIDTIRTFDPENQRSIEEISEIRLLPAHEFPTTESAIEDFRTRWRQRFEAR
REPESVYMQVSKGIWPAGIEYWQPLFFEHTETLFDYIAPESQLIVVGNIETAIDQFLTDV
EYRYQQRKVDPLRPLLPPHELWLKKDELFSLFKNVAQIQLSVEPISEKQGRINLAVSALP
DLAVMHQNKEPLAAIRQFSESFTGKIIFSVESEGRREALLELLQRVKLRPIEKETFQQAC
QAKEKQCLVLGASEHGFIDNNANLAFICESDLLGDRVILRRKKDRKVTNSDAVIRNLAEL
KPGQPVVHIDHGIGRYLGLQTLEAGGMMTEYVTLEYQNEAKLYVPVASLNLISRYSGGAE
ESAPLHKLGGEAWTKARRKAAEKVRDVAAELLDVYAKRELKPGYKFALDRGQYATFKAGF
PFEETDDQNTAINAVLSDMCQKKAMDRLVCGDVGFGKTEVAMRAAFVCTDNNKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSE
LKFSDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQHDESTIREALLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEAR
ITVAHGQMRERELEKVMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSIGFTLYMEMLEQAVEALKNGREPSLDDLLREQTEVEMRLPALLPDDYI
PDVNTRLSMYKQIASVASRDELAELKVELIDRFGKLPDAANNLLGVAEVKIDAARIKVKK
IEAHEKGGYIEFYPDADINPVFLVRLLQSQPKKFAMEGPTKFKFAVPLADRRERIQFVSS
MLSEFQQNLMPRA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgactacacactctttactgactctgattaaacctgctggcgcgggcgacaaaaaacac
attggtaacctacgtggtgcaagccttgcgttggcaattgcagagctagccaaccagcat
aatagccacactttactggctgtacctgatcctcaaaccgccttaaagctgcagcacgaa
attgagcagtttagtgacgccgaagtggcgctgtttcctgattgggaaactttgccttat
gatagtttttcgcctcatcaagagatcatttctgatcgcatcgcgcgcctgtatcaatta
ccgagcttgaaaacaggcattaccattgtgcctgtgagcaccatattgcagcgtcagacg
ccgcgagaatttctgctacagcataccctgatggttaaaactggcgatcagttttcctta
gataaactgcgtcttcagctggaaaaatcgggctatcgtcatgttgatcaagtgtttggc
ccaggcgagtacgccagccgaggttcgattcttgatttatttccaatgggcagcagcgat
ccttatcgcattgatttttttgatgatgaaatcgacaccatacgcaccttcgatcctgag
aatcaacgctcaattgaagagatcagtgagatacgcttgctacctgctcatgaatttccc
accacagaaagtgcaattgaagattttcgcacccgctggcgtcaacgatttgaagcgcgt
cgtgaaccagaatctgtctatatgcaagtctcaaaggggatttggccagccggtattgaa
tactggcaaccactattttttgaacacactgaaaccttgttcgattatatcgcgccagaa
agccaactaattgtcgtaggaaatatcgaaacagcgattgaccagtttttaaccgacgtc
gaatatcgttaccagcagcgtaaagttgaccctcttcgcccgttgctgccacctcatgaa
ttgtggcttaaaaaagatgagcttttcagtcttttcaaaaacgtggctcagatccaactc
agtgtggaaccaatttcagaaaagcaagggcggatcaatttagcggtcagtgcattaccc
gacttggcggtcatgcatcaaaataaagagcctttagccgccatccggcaatttagtgaa
agtttcactgggaaaatcattttttccgtcgaatcagaaggccgtcgcgaagcattacta
gagctattgcaacgcgtaaaactgcgccctatcgaaaaagaaaccttccagcaagcgtgc
caagcaaaagaaaaacaatgtctcgtattaggggcatctgagcacggctttatcgataac
aatgccaacttagcgtttatctgcgaaagtgatttactcggtgaccgtgtcattcttcgc
cgtaagaaagatcgtaaagtcaccaatagtgacgctgtcattcgtaacttagctgaactc
aaaccagggcaacccgttgttcatattgatcatggtatcggccgttatctcgggttacag
acgcttgaagcgggtggcatgatgaccgaatacgtcacccttgagtatcaaaacgaagcc
aaactttatgtccctgtcgcttcattgaatctcattagtcgttactctggcggcgcggaa
gaaagcgcaccattgcataagctcgggggtgaagcatggaccaaggcacgacgaaaagcg
gccgaaaaagtccgcgatgtcgctgcagagctgctggatgtttacgccaagcgagagctc
aaaccaggctataagttcgctctggatcgtggccaatacgcgacctttaaagcaggtttc
ccatttgaagaaaccgatgatcaaaatacagctatcaacgccgtgctatcggacatgtgt
cagaaaaaagcgatggaccgattagtgtgtggtgacgttggatttggcaaaacagaagtc
gccatgcgcgccgcctttgtttgcaccgacaacaataaacaagtggccgtattagtgccg
acaaccttactcgcacagcagcattttgagaactttcgagaccgattcgctaacctgccg
atccgtgtcgaagttttatcacgcttcaaatcagcgaaagagcaaaagcagattctacaa
gatgtcgccgacggcaaagtcgacattttggttggcacgcataaactgctttccagcgag
ctaaaatttagcgatcttggtcttttgatcgttgatgaagaacaccgttttggtgttcgc
caaaaagaaaaagtgaaagcgatgcgtgctgatgtggatatcctcacgctaacggcaacg
ccgattccgcgcacgttaaacatggcgatgagcggaatgcgcgatctatcgattatcgcc
acaccacccgcacgacgcttagccatcaaaacctttgtgcgccaacatgatgagagcact
attcgagaggctctattacgtgaaatcatgcgcggtggacaggtttattttctacataac
caagtagaaactatcgacaaagtggccgccgatttagaaaagctggtccctgaagctcgt
attaccgtcgcccatggacaaatgcgtgaacgtgagctggaaaaagtgatgaacgacttt
tatcaccaacgattcaatgtattggtttgcacaaccatcattgaaaccgggattgatgtc
ccaaccgcgaacaccatcattatggaccgagcagataaccttggcttagcgcagctacac
caacttcgtggccgagtaggacgttctcaccatcaagcttatgcttacttactcactcca
catcctaaagccatcactaaagatgccgtgaaacgtttagaagcgattgcatctcttgaa
gatcttggggctggttttactctagcaacgcacgatttagaaatccgtggagcgggtgaa
ttattaggcgatgaacagagcggtcagatccaatcgattggttttactctctatatggag
atgctagagcaagcggttgaagcattaaaaaatggcagagaaccttctcttgacgatttg
cttcgtgaacaaaccgaagtggaaatgcgtttgccagcgctattacccgatgattacatt
cctgatgtaaatactcgcctctccatgtataaacagatagcgagtgtcgctagccgagat
gagctcgccgagctcaaagtcgagttgattgatcgctttggtaagttacctgatgctgca
aataacttactcggcgttgctgaagtcaaaattgatgctgcacgtataaaagtgaagaaa
atcgaagcgcatgaaaaaggcggctacattgagttctatccagatgctgacattaatccc
gtctttttggttagacttctgcaatcacaaccgaaaaaatttgcaatggaagggccaact
aagtttaagtttgctgtaccattagctgatagacgtgaacgaattcaatttgtgtcgagt
atgctcagcgaattccaacaaaacctgatgcctagagcataa
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integrated database retrieval system
