Vibrio anguillarum M3: N175_07995
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Entry
N175_07995 CDS
T02823
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lag
Vibrio anguillarum M3
Brite
KEGG Orthology (KO) [BR:
lag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lag03019
]
N175_07995
Enzymes [BR:
lag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
N175_07995
Messenger RNA biogenesis [BR:
lag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
N175_07995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
T2SSE
ResIII
nSTAND3
ABC_tran
AAA_23
NACHT
AAA_30
TsaE
OPA3
SLFN-g3_helicase
NTPase_1
PhoH
Zeta_toxin
LYTB
Motif
Other DBs
NCBI-ProteinID:
AGU57653
LinkDB
All DBs
Position
1:1683918..1687853
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AA seq
1311 aa
AA seq
DB search
MTSSQPNQHKSMNASSNSAASLRNALKECMMRDRFRLSKRISGASKIKNEQAKHAVFDQI
ALDIAQSMMVAQQRLNNRVTIDYPDLLPVSQKRDDIAKAIAENQVVIVAGETGSGKTTQL
PKICAELGRGKYGLIGHTQPRRLAARSVASRIAQEMETELGGFVGYKVRFNDQISEQTQI
KLMTDGILLAEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSA
TIDPERFSNHFSGAPIIEVSGRTYPVDTRYRPLLGEEDADRDQLEGIFEAVDELCAEGLG
DILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHIGRRIVLATNVA
ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICIRL
YSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEE
LGAILPDTNKHGHDSKKQLTDMGRKLARLPIDPRLARMVLEAPKLGCVKELMVIAAALSI
QDPRERPSDKQQASDEKHRRFFDEESDFLSLVNLWNHIQTEQKALSSSQFRKQCKQDYLN
YLRVREWQDVYFQIHQSMREMDYKLNDEPGNYQNIHSAILVGLLSHIGIKDQEKNEYQGA
RNARFNIFPASGLFKKQPKWVMVAELVETSKLWGRIAAKIQPEWVEPLAQHLIKRSYSEP
HWSKKQAAVMAYEKVMLYGIPIVPKRLINYSTIDEPLCREIFIRSALVEGDWETKHAFFK
QNRRLLLEVEELEHKSRRRDILIDDEQLFEFYDQRVATDVVSGRHFDAWWRKASKATPDL
LNFEKEMLFKGDASHITDLDYPNFWHQNGIKLKLSYQFEPGVDSDGVTVHLPLPILNQIE
PTGFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPMELPLLDAMEKEL
RRMTGVEVKREDWKLEQVPDHLKITFRAVDHKNRKLNEHKDLYQLKESLKEKVQETLSQV
ADDDIEQQGLHTWSFGELPKVYQQKRGGFEVKAYPALVDSKESVEIKLFETEQEQLNAMK
AGQRRLILLNVPSPIKYLHTNLPNKSKLGLYFNPYGKVLDLIDDCIACGIDKLIEQQGGL
VWEPEQFEALKEFVRAELGDTVVDIAQQVETILTTAFNINKKLKGKIDFTMAFALSDIKA
QIEGLIFKGFATECGWKRLPDILRYMRAIERRMEKLPIDPNKDRLHMLKIEAVTNDYKAL
LNKIPRGAEVPENVKEIRWMIEELRVSLFAQQLGTPYPVSDKRIKNAIDAC
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcgtcacagcccaatcaacacaagtcaatgaacgctagcagcaacagtgcggca
tctctgcgcaatgcattgaaagaatgcatgatgcgtgatcgttttcgtctgagtaaacgc
atctctggtgcgagcaaaataaaaaatgagcaagccaaacatgccgtttttgatcaaatt
gcgctcgatattgctcagtcaatgatggtggcgcagcagcgtctcaacaaccgcgttacc
atcgactaccctgatttattgcccgtaagccaaaaacgcgatgatatcgccaaagcgatt
gctgaaaaccaagtggtaattgtggcgggtgaaacagggtcaggcaaaacgactcagtta
cccaaaatttgcgcagaacttgggcgcggtaaatatggcctgattggccatacgcaacca
cgtcgccttgctgcgcgttcggtggcgagccgaatagcgcaagagatggaaacagaactg
ggtggctttgttggctataaagttcgttttaacgatcaaatttctgagcagactcagatc
aaattgatgactgacgggatattgttggccgaaatccagcatgatcgttttctcaatcag
tacgacaccatcattatcgatgaagcgcatgagcgcagcttaaatatcgattttatctta
ggttatttgaaagaactgctgccgcgtcgtccggatctcaaagtcatcattacttcggcc
accatcgatcctgaacgcttctctaaccattttagcggtgcgcctatcattgaagtgtcg
ggtcgtacttatccggtcgatacgcgttatcgaccactgcttggtgaagaggacgcagac
cgcgatcaacttgaaggtatttttgaagccgtcgatgaactctgtgctgaaggacttggc
gatattctgatcttcatgaatggtgagcgagaaattcgtgatacggccgatgcgctcagt
aaacgtaacttacgtgatactgaaattgtgccgctttatgcacgattatccgccggtgag
cagaataaaatctttcagccccatatagggcggcgcattgttttagccaccaacgtggca
gaaacatcccttaccgttccgggtatcaaatatgtcatcgaccctggtacggcgcgtatc
agccgttatagctaccgcaccaaagtccaacgtttgccgattgaaccaatttctcaagcg
agtgcaaatcagcgtaaaggacgttgtggccgtgttgaagaagggatctgcatacgcctc
tattccgaagaggattttctttcacgcccagaatttaccgatccggaaatactgcgtacc
aacttagcctcggttattttacaaatgaccgcacttgggctgggtgatattgaagcattc
ccgtttgtggaagcgccggataaacgtaacattcaagatggtgtgcgtttgcttgaagag
cttggtgcgattcttcctgataccaataaacacggtcacgacagcaaaaagcagttgacg
gatatggggcgcaaattagcacgcttgccgattgatccccgtttggcgcgtatggtgctc
gaagcgccaaagcttggctgcgtaaaagagctgatggtgattgccgctgcactttcgatt
caagacccacgcgaacgcccatcagataaacaacaagcctcagatgagaaacatcgccga
ttttttgatgaagagtccgatttcctgagcctagtgaatttgtggaaccacattcaaact
gagcaaaaagcgttaagcagcagccaatttcgtaagcagtgcaaacaagattacctcaat
tatttgcgggtacgcgaatggcaggatgtctacttccaaattcaccaatcgatgcgtgaa
atggattacaaattgaacgacgaaccgggcaattaccaaaatatccacagtgcaattttg
gttggtttactgtcgcacatcggtatcaaagaccaagagaaaaatgaataccaaggggct
cgtaacgcccgctttaatatctttcccgcttctggtctgtttaaaaagcagcccaagtgg
gtgatggtcgccgaattggtggaaacctctaaactgtgggggcgtattgcagctaaaatc
cagcctgaatgggtggaaccgctggcacagcatttgatcaagcgtagctacagcgaaccg
cattggtcaaaaaaacaagccgccgtcatggcctatgaaaaagtgatgttatatggcatt
cctattgtgcctaaacgtttgattaactacagcaccattgacgagccactatgtcgtgag
attttcattcgcagcgcattagttgaaggtgattgggaaaccaaacatgcgtttttcaag
caaaaccgtcgcttattacttgaagtcgaggagcttgagcataaatctcgccgccgcgat
attttgattgatgatgaacagcttttcgagttctacgatcagcgagtcgcaactgatgtg
gtctctgggcgtcattttgatgcgtggtggcgaaaagccagcaaagccaccccagatcta
ctcaactttgaaaaagagatgctatttaaaggtgatgctagccacatcactgatttagat
tatcccaacttttggcaccaaaacggtattaagctgaagctcagctatcaatttgaacct
ggcgtggatagtgacggtgtcacggtacatttgccattgccgatcctaaatcaaattgag
ccgacagggtttgattggcagatccccgggttacgtcatgaattggttgtcagcctcatc
aagtctttgcctaaaacactgcgcaaaaactttgtaccagcacctaactatgcggatgcg
tttttagctcgtgtcacaccgatggaattgcctttattggatgcgatggaaaaagagtta
agacgcatgacgggcgtcgaggtgaagcgtgaagattggaagttagagcaagttccggat
catttaaaaatcacttttcgcgcggtggatcataaaaatcgcaaactcaacgagcataaa
gatttatatcagctgaaagagagtttgaaagagaaagtacaagaaacactctctcaagtg
gcagacgatgatattgaacagcaaggtttgcatacgtggagctttggtgaattaccgaaa
gtgtaccaacaaaagcgcggcggtttcgaggttaaagcctatccagcgttagtggatagt
aaagaaagtgttgaaattaagctttttgagactgagcaagaacaactcaatgcaatgaaa
gcagggcaaaggcgtctgattttgctgaacgttccttcaccgattaaatatctgcacacc
aatttaccgaacaagtcaaaattggggctctactttaacccgtatggcaaagtactggac
ctgattgatgactgtattgcttgtgggattgataagttaattgagcagcaaggcggttta
gtgtgggagccggagcagtttgaggcactgaaagagtttgtgcgcgctgaattgggcgat
actgtggtcgatatcgcccaacaagtggagacgatccttaccactgcattcaacattaat
aaaaagctgaaagggaaaatcgattttacgatggcttttgcgttatcggatatcaaagcg
cagatcgaaggtttgatctttaaaggctttgccaccgaatgcggctggaagcgtttgccg
gatattctgcgttacatgcgcgcgattgaacgtcggatggagaagttacccattgatcca
aataaggatcgtttgcacatgttgaaaattgaagcggtaactaatgattacaaagcgcta
ctaaacaagatacctcgtggtgcagaagtacctgaaaatgttaaagagatccgttggatg
attgaagagcttcgcgtgagtttatttgctcagcaacttggcactccttatccagtttca
gataaacgtataaaaaatgcgattgatgcttgttag
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