Vibrio anguillarum M3: N175_10050
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Entry
N175_10050 CDS
T02823
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lag
Vibrio anguillarum M3
Pathway
lag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N175_10050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lag03019
]
N175_10050
Enzymes [BR:
lag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N175_10050
Messenger RNA biogenesis [BR:
lag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N175_10050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NACHT
PhoH
AAA_22
Flavi_DEAD
Cas3-like_C_2
SF0329
AAA_25
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AGU58001
LinkDB
All DBs
Position
1:2137549..2138841
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AA seq
430 aa
AA seq
DB search
MRKPSLANCFDFLTLRARMPFSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVI
AAAQTGTGKTASFVLPILQMLSQGTTQRAKRVRALILAPTRELALQVEENVTQYAKYLPL
TCLAMYGGVDSQKQKQRLIEGVDILIATPGRLLDMYGQRAVHFDELEVLVMDEADRMLDM
GFIEDINKIVDRLPLNRQNLLFSATLSRPVRELAKSAINDPIEIDVAGYNRTPNQIEQWI
ITVDKDQKSALLSHLITENQWQQAMIFIETKHGAAKLASQLEKRGIAAEAFHSGRSQEVR
EKLLADFKAGKLQFLIATGVAARGIDIDNLERVVNYDLPYPAENYIHRIGRTGRAGATGE
AISLVSRDDFKNLCMIESRLGHLLVRKEIEGFTPKKDVPISILNYHLKKRDNEHSSAPRR
SPRPKQEKRS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagccatcgcttgctaactgttttgactttttaactctgagagcccgcatgcca
ttttccaacctaggattgagcgatccaatcttaaaagccgttcacgaactcggctattct
gccccaacaccgattcaagaacaggcaatcccagccattttgacgggtaaaaatgtcatt
gcggcagcgcaaaccggtacgggtaaaaccgctagctttgtactgcccattttgcagatg
cttagtcaaggaacaactcagcgcgccaaacgtgttcgcgcattaattttagcgcccact
cgcgaattggctctgcaagtggaagagaacgtcactcaatacgcaaagtatctgccctta
acctgccttgcgatgtacggcggtgtcgattcgcaaaaacaaaaacaacgcttgattgaa
ggggtggatattttgatcgccacgccggggcgcttgcttgatatgtatggccaacgcgcc
gttcattttgatgagcttgaagtgttggtgatggatgaagctgaccgcatgctcgacatg
ggtttcattgaagacatcaataaaattgttgatcgcctgccactaaaccgtcagaactta
ctgttttcggcgaccctttctcgcccagtgcgcgagttggccaaatcagccattaatgat
ccgattgaaattgatgtcgctggttacaaccgcacgccaaatcaaatcgagcagtggatt
atcactgtcgataaagatcaaaaatctgcactactgagccatttgattactgaaaaccaa
tggcaacaagcgatgattttcatcgaaaccaaacacggtgcggcaaagctggcgagccaa
ctggaaaagcgtggcattgcggcagaggcgtttcacagtggccgtagccaagaagttcgt
gaaaaattattagccgatttcaaagcaggtaaactgcaatttttgattgcaacgggcgtt
gccgcgcgcggtattgatattgacaacttagaaagagtggtgaattacgacttgccttat
cctgcggagaactacattcaccgtattggacgaaccggtcgtgctggtgcaaccggtgaa
gcaatttctctcgtatcacgcgatgattttaaaaacttgtgcatgattgaaagccgctta
ggacatttgcttgtgcgtaaagaaattgaaggtttcacaccgaaaaaagacgtgcctatt
tccattttaaattaccacttgaaaaagcgtgataacgagcactcaagtgcaccgcgtcgt
agccctcgccctaaacaagaaaaacgctcataa
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