Vibrio anguillarum M3: N175_12385
Help
Entry
N175_12385 CDS
T02823
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lag
Vibrio anguillarum M3
Pathway
lag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N175_12385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lag03019
]
N175_12385
03016 Transfer RNA biogenesis [BR:
lag03016
]
N175_12385
Enzymes [BR:
lag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
N175_12385
Messenger RNA biogenesis [BR:
lag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
N175_12385
Transfer RNA biogenesis [BR:
lag03016
]
Prokaryotic type
tRNA degradation factors
N175_12385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
S1_RRP5
KH_2
KH_SLS1_2
aRib
DUF3016
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AGU58379
LinkDB
All DBs
Position
1:complement(2627184..2629310)
Genome browser
AA seq
708 aa
AA seq
DB search
MFDKPVVKSFQYGNHTVTLETGVIARQATSAVMVTMNDTAVFVSVVGKKEAVEGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNAFKNEVQVIATVMS
VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSMTELAVSRLDLVV
AGTDNAVLMVESEADNLTEEEMLAAVVYGHDQQQAVIKAINEFAAEVATPAWDWVAPQEN
TVLNSKIAELAEAKLVEAYKITEKMARYDRIHEIAAEVNKVILAEDPEANAKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGILPRTHGSALFTRGETQAIVTATLGTQ
RDAQIIDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVE
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTNQGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDQ
AISGARAEISEFAPRIYTMKISSEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TDSAQAKEAIRRIEEITAEVEVGAIYTGKVARLADFGAFVNILPGKDGLVHISQIADQRI
EKVSDYLKEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEVVAAPTAE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtttgataaaccagtagtgaaatcattccaatacggtaatcataccgtcactctagaa
accggcgttatcgcacgccaagctacatcggccgttatggtcactatgaacgataccgcg
gtattcgtttctgttgttggtaaaaaagaagcagtagaaggtcaagacttcttccctctt
actgttaactaccaagagcgtacttacgcagcgggtaaaattccaggtggcttcttcaag
cgtgaaggtcgtccatcagaaggcgaaactttgactgcgcgtctgattgaccgcccaatt
cgtcctcttttccctaatgcatttaaaaatgaagttcaagtcatcgcgacagtgatgtct
gtaaacccagacgttcaacctgatatcgtgactatgattggtacttcagcagcacttgct
atctctggcattccattcaatggtcctattggcgcggcgcgcgtgggtcacattgatggt
caattagtacttaaccctagcatgaccgagcttgcagtatctcgtcttgatcttgtggtt
gcaggtacagacaacgcagtgctgatggttgagtcagaagcggataacctaactgaagaa
gaaatgctagcagcggttgtttacggccacgaccaacaacaagctgtgattaaagcgatc
aatgaatttgctgctgaagttgccactccagcttgggattgggttgctcctcaagagaac
acagtacttaacagcaagatcgctgaactagcagaagctaagcttgttgaagcttacaaa
atcactgaaaaaatggctcgttacgaccgtattcatgaaattgctgctgaagtaaacaaa
gtaattcttgctgaagatcctgaagcaaatgcgaaagaaatccacactatcttccacgat
ctagagaagacggttgtacgtcgtagcattattgctggcaacccacgtattgacggtcgt
gaaaaagacatggttcgtgcgctagacgtacgcactggtattcttcctcgtactcacggt
tctgcactatttactcgtggtgaaactcaggcaatcgtaaccgctactcttggtactcag
cgtgatgctcaaatcatcgatgagctaacaggtgagcgtaaagataacttcctactacac
tacaacttccctccatactgtgtgggcgaaactggttttgtaggctctcctaagcgtcgt
gaaatcggccacggtaaactggctaagcgtggtatcgctgccgttatgccttcagtggaa
gagttcccatacacagttcgtgtcgtatcagaaatcacagaatctaacggttcatcttca
atggcttcggtatgtggtacttctcttgctctgatggatgcaggtgtaccaatcaagtct
tcagttgcaggtattgcaatgggtcttgttaaagaaggcgatgatttcgttgttctttct
gacattcttggtgatgaagatcacctaggtgacatggactttaaagtagcgggtactaac
caaggtatcactgcactgcaaatggacattaagatcgaaggtatcaccaaagagatcatg
caaattgcgctaaaccaagcacaaggtgcacgtaagcatatcctttctgtgatggatcaa
gcgatctctggtgctcgtgctgagatttctgaatttgcaccacgcatttacaccatgaag
atcagctctgagaaaatcaaagacgtgatcggtaaaggtggtgctgtgatccgtgctcta
actgaagagacgggcacaaccatcgaaatcgaagatgacggtacaatcaagattgcggca
accgatagcgctcaagctaaagaagcgattcgtcgcattgaagagatcacggctgaagtt
gaagtcggcgctatctatactggtaaggtcgctcgtctggctgattttggcgcgttcgtt
aacattcttcctggtaaagatggtctggtacacatttctcaaatcgcggatcaacgcatc
gagaaagtgtctgattacttgaaagaaggccaagaagttcaagttaaagtacttgaaatc
gaccgccaaggccgtgttcgtctaagcatgaaagaagcggtagagaaaccagctgaagaa
gttgttgcagcaccaacggctgaataa
DBGET
integrated database retrieval system
