Vibrio anguillarum M3: N175_14385
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Entry
N175_14385 CDS
T02823
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lag
Vibrio anguillarum M3
Pathway
lag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N175_14385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lag03021
]
N175_14385
03400 DNA repair and recombination proteins [BR:
lag03400
]
N175_14385
Enzymes [BR:
lag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N175_14385
Transcription machinery [BR:
lag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N175_14385
DNA repair and recombination proteins [BR:
lag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N175_14385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AGU58681
LinkDB
All DBs
Position
1:complement(3043071..3047273)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDLVAETEMMREELQTTNSETKRKKLTKRLKLVEAFISSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGMATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAQGEGMYLAGPKEAEKAYRTK
TAALHARVKVRITETVVDEDGYSTTETKMVDTTVGRAMLWQIVPKGLPYSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVVFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMDNLSSETVINRDGVEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTQEGVDMMPHIEGGDVKVSLTELAL
GRVVAEDVMKPGTEEVLIPRNTLIDEKWCQIIDENSVDNMKVRSVVTCDADFGCCALCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNKGSVKL
HNAKFVINKDKKLVITSRASELTIIDEFGRTKEKHKLPYGSVLSKGDNDAVEAGQTVANW
EAHTMPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDAKGKDVMIPGTDMPAQYFLPGKAIVNIEDGAEVGIGDTLARIPQKSGGNRDITGGLPR
VADLFEARRPKEPAILAEHTGTVSFGKETKGKRRLIITREGDETYEEMIPKHRQLNVFEG
EKIERGDVIADGPETPHDILRLRGIHAVTSYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSEFLAGEQVEYSQVKVANRNLEAEGKQPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQAKRAAQLKGPS
AEQATDNLAALLNAGFSSEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcacctgacatgattcgttcatggtcttttggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaagcctgaacgtgatggtctgttctgtgcgcgt
atttttggtccagtcaaagactacgaatgtctttgtggtaaatataagcgtctgaaacac
cgtggcgtgatctgtgaaaaatgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcatcaccggttgctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctgctaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtatgtagtaacagagccgggtatgacggatctagaaaagagtcagatgctt
actgaagaagagtatcttgaccgtctagaagagtggggcgatgagttcacggcgaagatg
ggcgcagaagcgatcaaagacctattgggttcaatggatcttgtcgctgaaacagagatg
atgcgtgaggagttacaaaccactaactctgaaactaaacgcaaaaaactgactaagcgt
ctgaagcttgttgaagcgtttatcagctcaggtaataaccctgagtggatgatcctgact
gtgcttccggtacttccgccagatctacgtcctctagtaccactagatggcggtcgtttt
gcgacatctgatctgaacgatttgtaccgccgtgtgatcaaccgtaacaaccgtttgaag
cgccttctagagctagcagctccggacatcatcgtacgcaacgaaaagcgtatgctgcaa
gagtctgttgatgcgctacttgataacggtcgtcgcggtcgtgcgatcacaggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aacctacttggtaaacgtgtagactactcaggccgttctgtaatcacagtaggtccatat
ttacgtctgcaccagtgtggtcttcctaagaagatggcacttgagctatttaaaccattt
atctacagcaagttagagactcgcggcatggccacgacgatcaaagcagctaagaaaatg
gttgagcgtgaagaagcggttgtttgggatatcctagacgaagtgattcgtgaacaccca
gtactactaaaccgtgcaccaacactgcaccgtcttggtattcaagcgttcgaacctgta
ctgattgaaggtaaagcgattcaactgcacccacttgtgtgtgcggcgtataacgcggac
ttcgatggtgaccaaatggcggttcacgtgcctctaactttagaagcacagcttgaagct
cgtacactgatgatgtcgacgaacaacattctatcgccagcatccggtgatccgatcatc
gtaccttcacaggacgtggtcttgggtctgtactacatgactcgcgaaaaaatcaacgca
caaggtgaaggtatgtacctggctggccctaaagaggctgagaaggcataccgtactaag
acagcggcgctacacgcacgcgttaaagtacgtatcactgaaaccgttgttgatgaagat
ggttacagcacaactgagactaagatggtcgatacgactgtcggtcgtgccatgctatgg
caaatcgtgcctaaaggcttgccatacagcatcgtgaaccagaagcttggtaagaaacag
atctcaaatctattaaacgaagcgtatcgtaagcttggtttgaaagatacggtcgtattt
gctgaccaaatcatgtacaccggttttgcttatgcagcactgtcaggcgtgtcagttggt
atcgacgacatggttgtaccagcagcgaaatacactgaaattgctgaagctgaagaagaa
gtacgcgaaatccaagaacagttccaatcaggtcttgttacggcgggtgagcgttacaac
aaagttatcgatatctgggcgtctaccaacgaccgtgttgcgaaagcgatgatggataac
ctatcttctgaaaccgtgatcaaccgtgatggtgtagaagaacaacaagaatcgtttaac
agcatctatatgatggctgactcgggtgctcgtggttctgctgctcagattcgtcagctt
gcaggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgcctatcaca
gcaaactttaaagaaggcctgaacgtactacagtactttatctctacccacggtgcacgt
aagggtctagccgatacagcacttaaaacagcgaactcaggttatctgactcgtcgttta
gtagacgttgcacaagacgttgtggtgacagagcatgactgtggcactcaagaaggtgtc
gacatgatgcctcatatcgagggtggtgatgttaaagtttctttaactgaactggctctt
ggtcgtgttgtggctgaggatgtgatgaagccaggcactgaagaagtacttattccacgt
aatactctgattgatgagaagtggtgtcagattatcgatgagaactctgtcgataatatg
aaagtacgttcagtggtaacctgtgatgcggacttcggctgttgtgcgctatgttacggt
cgtgaccttgctcgtggtcacctagtgaaccaaggtgaggcagtcggtgttattgctgct
caatctatcggtgagccgggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcttctactgctgcggcagagaacagcatccaagcgaagaacaaaggttctgtgaaactt
cacaacgctaagttcgttatcaacaaagataagaagctggttatcacatctcgtgcatca
gagctgactatcattgacgaatttggtcgcacgaaagaaaaacacaaactgccttacggc
tctgtgttgagtaaaggtgataacgacgcggttgaagctggtcaaacagtggctaactgg
gaagcgcacaccatgccaatcatcactgaagtggctggtcgcatccaattcgttgatatg
attgatggtgtaacggtttctcgccaaacagatgacctaacgggtctatcttcaagcgaa
gtaaccgaagctgccgctcgtccagcagcaggtaaagatatgcgtccagctatcaaactt
gttgatgcgaaaggtaaagatgtcatgatccctggtactgatatgccagctcaatacttc
ttaccgggtaaagcgatcgttaacatcgaagatggtgctgaagttggtattggtgacaca
ttagcgcgtattccacaaaaatctggcggtaaccgagacatcacgggtggtctacctcgc
gtagctgacttgtttgaagctcgtcgaccaaaagagcctgcgattcttgctgagcacaca
ggtactgtgagctttggtaaagaaaccaaaggtaaacgtcgtctaatcatcactcgtgag
ggtgacgaaacttatgaagaaatgattcctaagcatcgtcaacttaacgtgtttgaaggt
gagaagatcgaacgtggtgacgttattgctgatggtcctgagactccgcacgatatccta
cgtttacgtggtatccatgctgtaacgtcttacatcgctaacgaagttcaagaagtttac
cgtctgcaaggcgttaagattaacgataagcacattgaaactatcgttcgtcaaatgcta
cgtaagtgtacgattactcatgctggcgactctgagttcctagcgggtgagcaagttgaa
tactcacaagtgaaagttgcaaaccgtaacctagaagccgaaggcaaacagcctgctcgt
ttcgagcgtgagctactaggtattactaaagcatctctagcgactgaatcgttcatctct
gcggcatcgttccaagagacaactcgcgtactaacagaagcggctgtttctggtaaacgt
gatgatcttcgcggtctgaaagaaaacgtaatcgttggtcgtctgatcccagcgggtaca
ggtttcgcttaccaccaagaacgtcaagctaaacgtgcggcacagctaaaaggcccgtct
gctgaacaagcgacagataacctagcggcactgctaaacgcaggtttctcttctgaagag
taa
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