Vibrio anguillarum M3: N175_18650
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Entry
N175_18650 CDS
T02823
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lag
Vibrio anguillarum M3
Pathway
lag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N175_18650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lag03019
]
N175_18650
03009 Ribosome biogenesis [BR:
lag03009
]
N175_18650
Enzymes [BR:
lag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N175_18650
Messenger RNA biogenesis [BR:
lag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N175_18650
Ribosome biogenesis [BR:
lag03009
]
Prokaryotic type
rRNA helicases
N175_18650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
WCX
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGU59739
LinkDB
All DBs
Position
2:928685..930703
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AA seq
672 aa
AA seq
DB search
MQDSVIQFSELALNDSILSALNEMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAF
SLPLLNKLNLSQHKPQAIVMAPTRELAIQVAAEIKNLGQKIQGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVKDLITRDRLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPGT
AQRVLFSATMPPMVKTIVDRYLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL
ETEETDASIVFVRTRQDTERLADWLLSRGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSQMEEIQLPMRDKVAEARLIKLGAELEADKGHTALDKFVELIEKLQQSLEIDATT
LAAILLKRQQGNRPLFYVGPDPMVDAIEREKSRRRDRKEGSERGERREGGRDSRDGREGR
REYGTASNDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKS
MSSDVEGKLRKLRIRQKEVGAVVCDFDDFRESRGRREGGNGGGARREGGNGGFRNREGGA
PAAGAGRGGREGGFRGNRDGAAATGRDGERRFDRNRGGDHRGNFRGERGHGNASANANAN
AGTLSRPRRAEA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgcaagactctgtaattcaatttagtgaattagccctaaacgactcaatcctttctgct
ctaaatgaaatgggtttcgtttctccaactcctatccaagctgctgctattccatttctt
cttgaaggaagagatgcgctaggtaaagcacaaacaggtacaggtaaaacggctgcgttt
tctctacctctactaaacaaattaaacctttctcaacacaagccacaagcaattgtgatg
gcaccaactcgtgagcttgctatccaagttgcggcagaaatcaaaaaccttggccaaaag
attcaaggccttaaagtacttgagatctatggcggtgcttctattgttgaccaaatgcgc
gctctgaaaaatggtgctcatattgtggttggtacacctggtcgtgtaaaagatttgatc
actcgtgatcgccttcatttagacgaatgtcataccttcgttcttgatgaagctgacgaa
atgctcaaaatgggcttcgttgatgacgtaacttggatcatggaacaagcacctggcacc
gctcaacgcgtgctgttctctgcgactatgcctcctatggtgaagacgattgttgaccgt
tacctacgtgatccagctcgtgttgacgtagcaggttcaaaccaaactgttgcgaaagta
gagcagcaatattgggttgttaaaggtgttgaaaaagatgaagcgatggctcgtcttctt
gaaacagaagaaaccgatgcgtcaatcgtctttgtacgtactcgtcaagacaccgagcgt
ttagctgattggttattatctcgtggctttaaagcggcagcgcttcatggtgatattccg
caatcactgcgtgagcgcacggttgatcatatcaaacagggtgtaatcgacattcttgtt
gcgacagacgttgttgctcgtggtcttgatgttccacgtattacacacgtgttcaactat
gatatcccattcgatgtagaatcatacatccaccgtattggccgtactggccgtgctgga
cgcaaaggtaaagcgatccttctagttcgcacgaaccaaattcgtatgttgcgtacgatt
gagcgcgtaactcgttctcaaatggaagagattcaacttccaatgcgtgacaaagttgct
gaagctcgtctcatcaaactgggtgcagagctagaagctgacaaaggtcatactgcttta
gacaaatttgttgagctcattgaaaaacttcaacaaagcctagagattgatgccacaaca
ctagcggccattttactgaagcgccaacaaggcaatcgtccactattctatgtcggccca
gatccaatggtcgacgcgatcgagcgtgaaaaatcacgtcgtcgtgatcgtaaagagggt
agtgagcgtggtgaacgtcgtgaaggcggtcgcgatagccgtgatggacgcgaaggtcgc
cgcgaatatggtactgcgagcaatgactgggatacttatcagttacaagtcggccgtgag
caaggcgtgcaagtgaaagacatcgttggtgctttagctaatgaacttggtttaaccaaa
ggttcaattggtgcaattaaacttgctcaaggccatacattcgtacagcttcctaaatca
atgtcttcagatgttgaaggcaaattgcgtaaactgcgtattcgccaaaaagaagtcggt
gctgttgtatgtgactttgatgacttccgcgagtctcgtggtcgtcgtgaaggtggtaac
ggtggtggtgcccgtcgtgaaggcggaaacggtggcttccgtaatcgtgaaggcggtgct
cctgcggctggcgcaggtcgtggtggccgtgaaggtggcttccgtggcaaccgtgacggt
gcagcggcgactggtcgtgatggtgagcgtcgttttgaccgcaaccgtggtggcgaccat
cgtggtaacttccgtggtgaacgtggtcacggcaatgctagtgctaatgctaatgccaat
gcgggtacgttaagtcgtcctcgtcgcgctgaagcataa
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