Roseibium algicola: B0E33_00225
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Entry
B0E33_00225 CDS
T04723
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lagg
Roseibium algicola
Brite
KEGG Orthology (KO) [BR:
lagg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lagg03032
]
B0E33_00225
03400 DNA repair and recombination proteins [BR:
lagg03400
]
B0E33_00225
Enzymes [BR:
lagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
B0E33_00225
DNA replication proteins [BR:
lagg03032
]
Prokaryotic type
DNA Topoisomerases
B0E33_00225
DNA repair and recombination proteins [BR:
lagg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
B0E33_00225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AQQ02211
LinkDB
All DBs
Position
49791..52469
Genome browser
AA seq
892 aa
AA seq
DB search
MNVVIVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKDGSVLPDDNFAMSWQVDAKAQK
RLSEIANAVKDADRLILATDPDREGEAISWHVLEVLQKKKVLKDKQVERVVFNAITKKAI
LEAMDNPRQLDTPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLICDR
EMEIETFKPQEYWSIFANMKTPTGDMFQAGVTGFDGKKIGRLDINNEAEATAIKTMLESA
SFKVDSVASKPAKRNPAAPFTTSTLQQEASRKLGFSASRTMQVAQKLYEGISIGGETSGL
ITYMRTDGVQIAGEAIAAARSVIAKDFGDNYVPESPRVYTSKAKNAQEAHEAIRPTDLSR
RPKDVARFLDPDQAKLYELVWKRTMASQMESAVLERTTIEILADGSGKRANLRATGSVVR
FDGFLALYQEGRDDEEDENSKRLPAVDEGAALTAASVDGTAQAIEASQHFTTPPPRYTEA
SLVKKMEELGIGRPSTYASTLQTLRDRDYVELDKKQLVPMDKGRIVTAFLESFFQRYVEF
DFTASLEEQLDKISAGELSWLDVLRDFWTGFSGAVDEIKDLRVAHVIDALNELLGPHIFP
PKEDGTDPRKCPSCDTGQLSLKVSRWGAFIGCSNYPECGFTRQLGKPSGEDGEGDDGPKV
LGTDPETGLDVSLRNGRFGPYVQLGEEAKPKRASLPRGWSAPDMDLEKALQLLSLPREVG
PHPEDGKMISAGIGRYGPFVLHEGTYANLSTPDEVFSVGINRAVDALAQKRAKGGGRGGA
AATPLKELGDHPSEGGPINVYDGRYGPYVKHGKINATLPKDTDPKAVTMEQALELIAAKA
SKGGTKKKAAAKKPAAKKTATKKTATKKTTAKSSAKAKVDASSEEVPWDDAS
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcgtcattgtcgaatcgccggcgaaagccaagacgatcaacaaatatctcggt
tccgactatacggtgctggcttcctacggccatgtgcgagatctgccggccaaggacggc
tcggtgctgccggacgacaatttcgccatgagctggcaagtggatgcgaaggcgcagaaa
cggctgagcgaaatcgccaatgcggtcaaggatgccgaccgcctcattctcgcgactgac
cctgaccgcgaaggggaagcaatttcgtggcacgttctggaagtgctgcaaaagaagaag
gtgctgaaggacaagcaggtcgagcgcgtggttttcaacgcgatcaccaagaaggcgatc
ctggaagcgatggacaatccgcgccagctggatacgccgctggtcgatgcctatctcgcc
cgccgagcactggattacctggtcggtttcaccctgtctccggtcctgtggcgcaagctg
cccggtgcccgttccgccgggcgcgtgcagtctgtcgcattgcggctgatctgcgaccgg
gaaatggaaatcgaaaccttcaagccgcaagaatactggtcgatcttcgccaacatgaag
acaccgaccggggacatgttccaggctggcgtgaccggttttgacggcaagaaaatcggc
cgtctcgacatcaacaacgaagcggaagccaccgcgatcaagacgatgctggaaagtgcc
agcttcaaggtcgacagcgtggcttccaagcctgcgaagcgcaatccggcggcgccgttc
acgacctccaccctgcagcaggaagcctcacgcaaactcgggttttccgcatcgcgcacc
atgcaggtggcgcagaagctttatgagggcatttcaatcggtggcgagacttccggtctc
atcacctatatgcgtaccgacggcgttcagattgccggcgaagcgatcgctgccgcccgc
tccgtaatcgccaaggatttcggtgacaattacgttccggaaagcccgcgcgtctatacc
tccaaggcaaagaacgcccaggaagcacacgaagcgatccggccaacggacctttcgcgt
cgcccgaaggatgtcgcccggttcctggatccggaccaggccaaactttatgagcttgtg
tggaaacggaccatggcctctcagatggagtcggccgttctggaacggaccaccattgag
attctcgccgacggttccggtaaacgcgccaatctgcgtgccactggctccgtcgtccgc
tttgacggttttcttgcgctttaccaggaaggccgggacgacgaggaagacgagaactcc
aagcgtctaccagcggtcgatgaaggtgccgcgctgacggctgcctctgtcgacgggacc
gcacaagccatcgaagcctcgcagcatttcacgacaccgccgccgcgctacaccgaagcg
agcctggtcaagaagatggaagagcttggcatcggccggccgtccacctatgcctcgacg
ctccagaccctgcgcgaccgtgactatgtcgaactcgacaagaagcagcttgttccgatg
gacaagggccgcattgttaccgcgttcctggaaagcttcttccagcgctatgtcgaattc
gacttcacagcgagcctggaagaacagctcgacaagatttccgcaggcgagctttcctgg
ctcgacgtgctacgtgatttctggaccgggttctccggcgcggtcgatgaaatcaaggac
ctgcgcgttgcccatgtcatcgacgcgctgaacgagctgctcgggccgcatatcttcccg
ccgaaggaggatggcaccgatccgcgcaagtgcccgtcctgcgacacaggtcagctatcg
ctcaaggtcagccgctggggcgctttcatcggctgctccaactatcccgagtgcggcttt
acacggcagctcggcaagccgagcggtgaagacggcgaaggtgacgacggcccgaaggtt
ctcggcaccgatccggaaaccggccttgacgtttccctgcgcaacggccgcttcggcccc
tatgttcagctgggcgaggaagccaagccgaaacgagcctccctgccccgtggctggtcc
gcaccggacatggatctggaaaaggcgctacagcttctgtcgctgccacgcgaggtgggg
ccacacccggaagacggcaagatgatctcggccggtatcggtcgctacgggcccttcgtg
ctgcatgaaggcacctatgccaacctgtccacaccagacgaagtgttctccgtcggcatc
aaccgtgctgtcgatgctcttgcgcagaaacgcgccaagggtggtggacgcggcggtgca
gcggcaacgccgctgaaggagcttggcgatcatccgtccgaaggtggcccgatcaatgtt
tatgacgggcgctatgggccttacgtcaagcacggcaagatcaacgccacgctaccgaag
gacaccgaccccaaggccgtgacgatggaacaggcgctggagctgatcgcggcaaaggcc
tccaagggcggcaccaagaagaaggcggctgccaagaaacctgctgcgaagaaaacagca
accaaaaagacggccaccaagaagacgacggcaaagtcatccgcaaaggcaaaggtcgat
gcgtcgtccgaagaggtgccctgggatgatgcgagttga
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