Roseibium algicola: B0E33_00230
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Entry
B0E33_00230 CDS
T04723
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lagg
Roseibium algicola
Pathway
lagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0E33_00230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lagg03019
]
B0E33_00230
03016 Transfer RNA biogenesis [BR:
lagg03016
]
B0E33_00230
Enzymes [BR:
lagg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B0E33_00230
Messenger RNA biogenesis [BR:
lagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B0E33_00230
Transfer RNA biogenesis [BR:
lagg03016
]
Prokaryotic type
tRNA degradation factors
B0E33_00230
BRITE hierarchy
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GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AQQ02212
UniProt:
A0ABM6HW04
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All DBs
Position
52532..54784
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AA seq
750 aa
AA seq
DB search
MPSREDILAFVADNPGRAGKREIARHFGIIGGARIHLKKMLKDLTDDGLMEKRNKRMIRP
GDLPPVFVANLIARDRDGELIATPVDWDDEAGTPPKILVLTGKTKATQPGLGDRALVRLT
EAESGPETEHVARVIRVLEKRQGAILGILRKRDGTRPPYLEPIDRKQRELDIDPRDLKDS
EDGDLVSVQVTRSGRYGHPVASVVERFGSMNSEKAVSEIALQSHGIPHVFPAAVEAQAES
AKPVEKLGKREDWRQVPLITIDPPDAKDHDDAVYAEADEDPSNEGGYICYVAIADVAYYV
TPGSPMDREANLRGNSVYFPDRVIPMLPERISNQLCSLREKEDKPALGVRMVFDKTGRKT
GHTFHRVLMRSAAKLSYLQAQKAIDGTTDEKTETLLDGVLKPLWAAYAVLKRGREAREPL
ELDLPERKIKLKPDGTVDHVYVPERLDAHKLIEEFMIQANVAAAETLEQKKTPLLYRIHD
ASTPEKLESLKDFLSTINIKLPSSGGLRPSAFNGILAKVKDTPQANLVNEVVLRSQAQAE
YAPQNIGHFGLNLRRYAHFTSPIRRYADLIVHRGLISALGLGKDGLPEGIETKLEAIGAE
ISAAERRAMLAERDTIDRLIALWMSDQIGASFQGRIAGVVKSGMFVRLTDTGADGFVPAS
TIGLDYYRYDEGSHALIGDKTGETYQLGDQVEVRLVEAAPFAGALTFELLSHGSIAGKRI
RKAAPKVRRGPPKGGRGKASPKKQGRRRSS
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcacgcgaggatattctcgcgtttgttgcagataacccggggcgtgcgggcaag
cgcgagattgcccgtcatttcggtattataggcggggcccgcatccatctgaaaaagatg
ttgaaggacctgaccgacgacggtctgatggaaaagcgcaacaagcgcatgatccgtcct
ggcgatctgccgccggttttcgtggccaatctcattgcacgcgaccgggacggtgagctg
atcgcgacccctgtcgactgggacgacgaggctggcactccgccgaaaattctggtgctg
accggcaagaccaaggcgacgcaacccggcctgggtgaccgcgcactcgtgcgcctgacc
gaagctgagagcggccccgaaacagaacatgtcgctcgcgtcatccgcgttttggaaaag
cgtcagggtgcaatcctcggaattctgcggaagcgtgacggcacccgcccgccctatctc
gaaccgattgaccgcaagcagcgggaactcgacatcgatccgcgtgacctcaaggactca
gaggacggagatcttgtcagcgttcaggtgacgcgctccggccgctacggccatcccgtc
gcgtcggtggttgagcgcttcggctcgatgaattcggaaaaggcggtttcggagatcgcc
ctgcaatcgcatggcattccgcatgtctttccggcagctgtagaagcgcaggccgagagc
gcaaagccggtggagaaactcggcaagcgcgaggactggcggcaggtgccgctgatcacc
atcgacccgcccgacgcaaaagaccacgacgacgccgtctacgccgaagcggacgaggac
ccttccaacgaaggcggctatatttgctatgtggcgattgcggatgtcgcatactacgtc
acccccggctctccgatggaccgggaagcgaacctgcgcggcaactcggtctattttccc
gaccgggtgatcccgatgctgccggagcgaatttccaaccagctctgctcgctccgggaa
aaggaagacaagccggcgcttggcgtgcggatggtgttcgacaagaccggacgcaagacc
ggccacacctttcacagggtgctgatgcgttcggcggcaaaactctcctatctgcaggcc
cagaaggcgattgacggcacgacagacgagaagaccgaaaccctgctcgacggcgtcctg
aagccgctatgggccgcttacgccgtgctgaagaggggacgtgaggcgcgcgaaccgctg
gaactcgatctgccggaacgcaagatcaagctgaaaccggatggaactgtcgatcatgtc
tatgttccggagcgtctggacgcccacaagctgatcgaagaattcatgatccaggcgaac
gtggcagccgccgaaacgctggagcagaagaaaacgcccctgctctaccggatccacgat
gcctcgaccccggaaaagctggaaagcctgaaagactttctgtcgacgatcaacatcaag
ctgccgtcctccggtggtctccgcccctccgccttcaacggcatacttgccaaggtgaag
gacacaccgcaggccaatctcgtcaacgaggtggtcttgcgcagccaggcccaggcagaa
tacgccccgcagaacatcggccatttcggcttgaacctgcggcggtacgcgcatttcacg
tcaccgatccgccggtatgccgatctgatcgtgcaccgtgggctgatatccgcgctcggg
cttggcaaggatggcttgccggaaggtatcgagacgaaactggaggccatcggcgctgaa
atctcggccgctgaacggcgggcaatgcttgccgaacgcgacaccatcgaccgtctgatt
gccctttggatgagcgaccagatcggcgcgagttttcagggcagaattgcaggggtggtc
aagtccggcatgtttgttcgcctgaccgacacaggtgccgacggcttcgtaccggcctcc
acaatcggcctcgattattatcgctatgacgaagggtcgcacgccctgataggtgacaaa
accggcgagacctaccaacttggcgatcaagtggaggtccggctggtggaagcagccccc
tttgccggtgcactgacattcgagctgctgagccacggcagcattgccggcaaacgcatc
cggaaagccgcgccaaaggtgcggcgcgggccgccgaagggcggacgcggcaaggcctca
ccgaagaaacagggtcgaaggagatcttcgtga
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