Roseibium aggregatum: B0E33_00370
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Entry
B0E33_00370 CDS
T04723
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lagg
Roseibium aggregatum
Brite
KEGG Orthology (KO) [BR:
lagg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lagg03016
]
B0E33_00370
Enzymes [BR:
lagg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
B0E33_00370
Transfer RNA biogenesis [BR:
lagg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
B0E33_00370
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AQQ02232
UniProt:
A0A0M6XXU5
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All DBs
Position
82286..83470
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AA seq
394 aa
AA seq
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MHVITKTKDLAAACQRLAAHDYVTVDTEFLRETTFWPKLCVIQMAGPDMAFIVDALSEGL
DLEPFFELMRDGNVTKVFHAARQDIEIIYHLGELIPAPLFDTQVAAMVCGFGDSISYDQL
VYKVTGARIDKSSRFTDWARRPLTAKQLDYALADVTHLRDAYQFLKANLAEQDRSHWVQD
EMQVLTSINTYRTDPEQAWKRLKLRVRKPVELAVMMEVAAWREREAQSRDVPRSRVIKDD
AIYELAAQQPQDAESLARLRTIPRGFERSKSADEILKAVRRAVSLPKNEMPKLPKGRQAP
DGSAAAVDLLKVLLKLVSEAHGVAAKVIATVDDLEKIAADDAADVAAMKGWRRELFGETA
LKLKRGEVALAFQDRQIVAIDQPRQANVESEAAE
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtgattacaaaaacaaaagatctcgccgctgcgtgccagcgtcttgccgctcat
gattacgtgactgtcgacacggagtttctccgtgagacaaccttttggcccaagctctgc
gtcatccagatggcagggcctgacatggccttcatcgtcgatgccctgtccgaagggctg
gaccttgagccctttttcgagcttatgcgcgacggcaatgtgacaaaagtttttcacgct
gcccgccaggacattgaaatcatctatcatctgggagaacttatcccagccccgctgttc
gacactcaagtcgcggccatggtttgcggctttggtgattccatttcctacgaccagctt
gtctacaaggtgaccggtgcccggatcgacaagtcgtcccgcttcaccgactgggcccgc
aggccgctgacggcaaagcaactggattatgcgctggcggacgtcacgcatctgcgcgac
gcctatcagttcctgaaagcgaatctcgccgaacaggaccgcagccactgggttcaggac
gaaatgcaggtgctgacatccatcaacacctaccgtacggatcccgaacaggcctggaaa
cggctgaagcttcgagtgcgcaagccggttgaactggccgtgatgatggaagttgcagcc
tggcgcgaacgggaagcgcaatcacgcgacgttccgcgcagccgcgtcatcaaggacgat
gccatctacgaactcgcagctcagcagccccaggacgcagaatcgctcgcgcgcctcagg
accattccgcgcggcttcgagcgttcaaagtccgcagacgagatcctgaaagccgtcaga
cgggccgtttcgcttcccaagaacgaaatgccgaaactgccgaaaggtcgacaggcaccg
gacggttcagccgccgctgtcgatctcttgaaggttcttctgaaacttgtcagcgaagca
catggcgttgctgccaaggtcatagccacggtggatgatcttgaaaagatcgctgcggat
gatgctgccgatgtggcagccatgaagggctggcggcgcgagcttttcggcgaaaccgcg
ctcaagctgaagcgcggtgaagtcgccctcgccttccaggatcgtcagatcgtcgcgatt
gatcagccgcggcaggcgaacgttgaatcggaagcggcagagtaa
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