Roseibium aggregatum: B0E33_05115
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Entry
B0E33_05115 CDS
T04723
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lagg
Roseibium aggregatum
Pathway
lagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0E33_05115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lagg03019
]
B0E33_05115
03009 Ribosome biogenesis [BR:
lagg03009
]
B0E33_05115
Enzymes [BR:
lagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B0E33_05115
Messenger RNA biogenesis [BR:
lagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0E33_05115
Ribosome biogenesis [BR:
lagg03009
]
Prokaryotic type
rRNA helicases
B0E33_05115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AQQ03055
LinkDB
All DBs
Position
1085144..1087261
Genome browser
AA seq
705 aa
AA seq
DB search
MTDLTSLAPALKAALAKRGYENLTSVQESVLSDAPPEADLLVSAQTGSGKTVAFGLALAP
TLLDGQDSLGQAGAPIALAIAPTRELALQVKEELTWLYNEAGAVTASCVGGMDPRTERRT
LERGVHIVVGTPGRLRDHIERGALDLSEIKAVVLDEADEMLDMGFREDLEFILDTAPQDR
RTLMFSATVPKPIAELAKRFQKDAVRLSTINAREQHGDIDYVAHPVAPNERENAIINVLR
QHEAEKAIVFCSTREAVSRLTSRLANRGFSIVSLSGELSQEQRSSALAAMKDGRARVCVA
TDVAARGIDLPNLDLVIHADLPTGKAALLHRSGRTGRAGRKGTCVLMVPFPRRRQAERVL
HFAGITATWKGAPTADDIRAKDKERLLADPALKVELEEEELAIANELLALHSPEQLAAAF
VKLRQSRLPAPEEVSDLDETSLRGRDAGSRGGRNAEITGKFEDGIWFSLSLGHRQRAEPR
WILPMICRAGHVTKKEVGAIKIFQNELYFEIAGSHGQRFADVVKREGTGEENATITLLDA
RGGKIPAPPKEDGFRRDRSDRSGPPKRRPRGADAPDYESLGAEDSMKSGRPKREGRGKFD
GPKGKFDGPRGKFDGPRGKSRRRSGDDDFVPHHPAYEPLNTKELARDLDGGERAPKRKER
AADGPDGDRRKPRTRSAANSAPPKKKAAKKNKPSRAERKASKTKP
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatttgacttctctcgccccggcgctgaaggccgcgctggcgaaacgtggctat
gaaaacctcacctccgtgcaggaaagcgttctcagcgacgcgccgccggaagccgacctt
ctggtatctgcgcagaccggatccggcaagaccgttgcctttggcctcgcacttgccccg
acgctgcttgacggccaggacagtctcggccaggcaggcgctcccattgcgctggccatt
gccccgacccgcgaacttgcccttcaggtgaaggaagaactgacctggctttataatgaa
gccggtgccgtaacggcctcttgtgtcggcggcatggacccgcgcaccgaacggcggacg
ctggaacgcggtgttcatattgtcgtcggcacgcctggccgcctgcgcgaccatatcgaa
cgtggcgcactggacctgtcggagatcaaggctgtcgtgctcgacgaagccgacgagatg
ctcgatatgggcttccgcgaagacctggaattcattctggataccgcgccgcaggaccgg
cgcacgctgatgttctcagcaacggttccgaagccgattgcagaactcgccaagcgcttc
cagaaagatgccgttcgactgtcgaccatcaacgctcgcgaacagcacggcgatatcgac
tacgtcgcgcatccggttgctccgaacgagcgcgaaaacgccatcatcaacgtgctgcgc
cagcatgaagcggaaaaggcaatcgtcttctgctcgacgcgtgaagctgtcagccggctg
acatcgcgcctcgcgaaccgtggtttctccatcgtgtccctttccggcgagctcagccag
gaacagcgttccagcgcgctggccgcgatgaaggatggccgcgcccgtgtgtgtgtggca
accgacgttgctgcacgcggcatcgacctgccgaacctcgatctggtgatccacgccgac
ctgccgacaggcaaggctgccctgctgcaccgttccggccgtacgggacgtgccggccgc
aagggtacctgtgtgctgatggttcccttcccgcgccgccgccaggcagagcgcgtgctg
cattttgccggcatcactgcgacctggaagggtgctccgaccgccgacgacattcgtgcc
aaggacaaggaacggcttctggccgatcccgcactcaaggtggaactggaagaagaagaa
ctggcgatcgcgaacgagctgcttgcgctgcacagcccggaacagcttgcagccgccttc
gtcaagctgcgccagtcgcgtctgcccgctccggaagaagtctccgatctcgatgagacc
tcgctccgaggcagggatgccggctcgcgcggtggccgcaatgcggaaatcaccggcaag
ttcgaagacggcatctggttctcgctgtcgctcggccaccgccagcgcgcagaaccgcgc
tggatccttccgatgatctgccgtgccggtcacgtcaccaagaaggaagtcggcgcgatc
aagatcttccagaacgagctctacttcgaaatcgccggcagtcatggccagcgcttcgcc
gatgtggtcaagcgcgaaggcactggcgaggaaaatgccaccatcacactgcttgatgca
cgtggcggcaagatccctgccccgccgaaggaagacggcttccgccgtgaccggtctgac
cgttccggcccgcccaagcgccgtccgcgtggtgcagatgcaccggattacgaaagcctc
ggtgccgaagacagcatgaaatccggccggccgaagcgcgaaggcagaggcaagttcgac
gggcccaaaggcaaattcgacgggccgcgcggcaagtttgacggacctcgtggcaaatcc
cgccgccggtccggtgacgacgatttcgtgccgcaccaccctgcctacgagcctctgaac
accaaggaactggctcgcgacctcgacggcggcgagcgcgctcccaagcgcaaggaacgt
gccgcggatggcccggacggcgatcggcgcaagccgcggacccggtcggctgccaactcc
gcgccgccaaagaaaaaggccgcaaagaaaaacaagccgtcgcgcgccgagcgcaaggcc
tcgaaaacaaagccctga
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