Roseibium algicola: B0E33_09110
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Entry
B0E33_09110 CDS
T04723
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lagg
Roseibium algicola
Pathway
lagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0E33_09110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lagg03019
]
B0E33_09110
03400 DNA repair and recombination proteins [BR:
lagg03400
]
B0E33_09110
Enzymes [BR:
lagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B0E33_09110
Messenger RNA biogenesis [BR:
lagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0E33_09110
DNA repair and recombination proteins [BR:
lagg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B0E33_09110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AQQ07259
LinkDB
All DBs
Position
1946533..1948356
Genome browser
AA seq
607 aa
AA seq
DB search
MRPEPKPLAVLQKVFGYSSFRGKQQAVIETLVDGNDAVVLFPTGAGKSLCYQIPALCRRG
VGIVVSPLIALMKDQVGALRAAGVQAAALNSTLSPEEQDGIRSALRRGEIDLLYVTPERL
GTESFRKFLDTLQIALFAIDEAHCVSQWGHDFRPEYMSLSCLRDRYPGVPRVALTATADP
HTQKDILARLQLEDAAVFSTSFDRPNIRYEIVERTNQRQQLLDFLKKHSGESGIVYCLSR
AKVEDIAEWLTSKGIRALPYHAGLPAEQRSANQDAFLLEEGLCLVATVAFGMGIDKPDVR
YVAHLDLPSSVEAYYQETGRAGRDGAPSEAFMAYGMADLVQRRRMIAEGDAPEEVKRAEN
AKLNALLGICETAGCRRQALLAHFGETYPKPCGNCDTCLSPVETWDGTEAAQKLMSAIYR
TGQRFGTAHVIDVLLGKTNEKSTRFGHDTLSVFGIGQDVPQKTWQSIARQLVAAGYVDVD
HAQFGALVLTEKARSVLRGDEKLALRKDRSAAGLKRTSSSRTASIADELDHEDRLLFERL
RRLRTQIARDQGVPPYVVFTDATLAGISAARPVTEDALLAVSGVGQSKLEKYGEAFLELV
EAFEAGV
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtccggagccgaagccgcttgcggttctgcagaaggttttcggctacagcagcttc
aggggcaaacagcaggcggtgatcgaaacgcttgtggacggcaacgacgctgtcgttctg
tttcccaccggcgcaggcaagtcgctctgttaccagatcccggcactgtgccggcgtggg
gttggcattgtcgtctcgccgctgatcgcgctgatgaaagaccaggtcggtgcgcttcgc
gccgctggcgttcaggccgcagctctcaattccacgctgtcacctgaagaacaggacggc
attcgcagtgccctgcgccgcggtgaaatcgacctgctctacgtgacaccggagcggctg
ggcaccgagagcttccgcaagttcctggacacgctgcagattgccctttttgccatcgat
gaagcgcattgcgtcagccagtggggacatgacttccgtccggagtacatgtcgctgtcc
tgtctgcgcgaccgctatccgggcgtcccgcgtgtggcgttgaccgcgactgccgacccg
cacacccaaaaagacattctggcccgcctgcagctggaagacgccgccgtcttttccacc
agcttcgaccggcccaacatccgctacgagattgtcgagcgcaccaaccagcgccagcag
ctgctggatttcctgaagaagcactccggcgagagtggcatcgtctattgcctgtcgcgg
gcaaaggttgaggatatcgccgaatggctgacctctaaaggcatcagggccctgccctat
catgccggattgcccgcggaacagcgctccgccaaccaggatgcgtttctgctggaagaa
gggctgtgcctggtggcgacggttgccttcggcatgggtatcgacaagccggatgtgcgc
tatgtcgcgcatctggatctgccctcttcggtcgaggcctattaccaggaaaccggccgt
gcaggccgcgacggcgctccctccgaagccttcatggcttacggcatggccgatctggtg
cagcgccggcgcatgattgccgagggcgatgcgcccgaagaggtcaagcgcgcggaaaat
gccaagctgaacgcgcttctcggcatttgtgaaacggccggttgccgtcgtcaggccctg
ctagcccatttcggcgagacctaccccaaaccctgtggcaactgcgacacctgcctgtcc
ccggtggagacctgggacggcacggaagctgcccaaaagctgatgtcggcgatctatcgt
actggtcaacgtttcggcacggcgcatgtcatagatgtgcttctgggcaagaccaacgag
aaaagcacccgcttcggccatgacacgctgtcggttttcggaattggtcaggacgtgccg
cagaagacctggcagtcgattgcccgtcagcttgtcgccgcaggctacgtcgatgtcgac
catgcccagttcggtgctcttgttctgacggaaaaggcccggagcgtcctgcgcggtgac
gagaagctcgccttgcgcaaggaccggagcgcggcaggcctgaaacggacgagttcttca
cgtacggcctccatcgccgatgaactggaccatgaagacaggctgctgtttgaacgcttg
cgcaggctgcggacccagattgcccgcgatcagggcgtaccgccctatgtagtgttcacg
gatgcgacgctggccgggatatccgctgcgcgcccggtgaccgaagatgcgctgctggcc
gtttccggtgtcgggcagtccaaacttgaaaaatacggcgaggcgttcctcgagctggtc
gaggcatttgaagccggcgtatga
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