KEGG   Roseibium algicola: B0E33_12335
Entry
B0E33_12335       CDS       T04723                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
lagg  Roseibium algicola
Pathway
lagg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lagg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B0E33_12335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lagg03021]
    B0E33_12335
   03019 Messenger RNA biogenesis [BR:lagg03019]
    B0E33_12335
Transcription machinery [BR:lagg03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     B0E33_12335
Messenger RNA biogenesis [BR:lagg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     B0E33_12335
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 S1CSD-TOTE-2 NACHT Fungal_virus_P2_C AAA Mor
Other DBs
NCBI-ProteinID: AQQ04278
UniProt: A0A0M6Y8Q0 A0ABM6I1Q5
LinkDB
Position
2639961..2641226
AA seq 421 aa
MREMKLKDLKEKTPTELLQTAEELEVENASTMRKQELMFAILKNLAAQDVEIIGEGVVEV
LQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFSLRTGDTVEGQIRSPKEGERYFALLKVN
TINFEDPEKARHKVHFDNLTPLYPDERFRMEIEDPTIKDLSSRVIDLVAPLGKGQRALIT
APPRTGKTVFLQNIAKSITTNHPECYLIVLLIDERPEEVTDMQRTVDGEVVSSTFDEPAA
RHVQVAEMVIEKAKRLTEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKISDKRVYPA
IDIQRSGTRKEELLVPAERLKKTFVLRRILNPMGTVDAIEFLLDKLKQTKSNDDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatgaaactcaaagacctaaaagaaaaaacaccgacagagctgctccaaact
gctgaggagcttgaagtcgaaaacgccagcaccatgcgcaagcaggagctgatgttcgcc
atcctgaagaacctagctgctcaggatgtggagattatcggcgaaggcgtcgttgaagtc
cttcaggacggcttcggctttctccggtctccggatgcgaactatctgccgggcccggac
gacatttacgtctcgccctcgcagatccgccgcttttcgctgcggacaggggacaccgtt
gaaggccagatccgcagccccaaagagggcgaacggtattttgcccttctcaaagtcaac
accatcaatttcgaggatccggaaaaggcccggcacaaggttcacttcgacaacctgacg
ccgctttatccggatgaacgtttccggatggagatcgaagatccgaccatcaaggatctc
tcctcccgcgttatcgacctggtagcgcctctcggcaaaggccagcgtgcgctgatcacc
gcgccgccgcgcacaggtaaaacggtgttcctgcagaacatcgcgaagtccatcaccacc
aatcatccggaatgctatctgatcgttcttctgatcgatgaacgtccggaagaagtgacc
gacatgcagcgcacggtcgacggcgaagtggtttcctccacgttcgacgaaccggccgcc
cgccacgtgcaggttgccgaaatggtgatcgagaaggctaagcgcctgaccgagcacggc
cgcgacgtcgtcatcctgctggactccatcacgcgtctgggacgtgcgtacaacaccgtc
gttccgtcttcaggcaaggtcctgaccggtggtgtcgacgccaacgccctgcagcggccg
aagcgcttcttcggtgcggcccgtaacattgaagagggtggctcgctgacgatcatcgcg
accgcactgatcgataccggcagccgcatggacgaagtcatcttcgaagagttcaagggt
acgggtaactccgaaatcatcctggaccgcaagatctccgacaagcgtgtttacccggcc
atcgatatccagcgctccggtacacgtaaggaagagcttctggtaccggccgagcgtctc
aagaagaccttcgtgctgcgccggatcctcaacccgatggggacggtggatgcgatcgaa
ttcctgctcgacaagctgaaacagaccaagtcgaacgacgatttcttcgacagcatgaac
acttga

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