Roseibium aggregatum: B0E33_20100
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Entry
B0E33_20100 CDS
T04723
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lagg
Roseibium aggregatum
Pathway
lagg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lagg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
B0E33_20100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lagg03021
]
B0E33_20100
Transcription machinery [BR:
lagg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B0E33_20100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
Phage_DsbA
Motif
Other DBs
NCBI-ProteinID:
AQQ07552
LinkDB
All DBs
Position
4347683..4349671
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AA seq
662 aa
AA seq
DB search
MVAKATQADDTQEQSTDGPDGPLLDLSDAAVKKMIKAAKKRGYVTYDELNEVLPSEQVSS
EKIEDTMSMLSDMGINVIDSDEAEEGPEEVDGGDLVAASTTALAKSTTKEPADRTDDPVR
MYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEAQVLLR
DIIDLEATYAGPDAKAGPAVANDDVAPGEGNSENSGGASEDTENESEDGDGEDDDDEFES
NVSLSAMEAELKPGVLETFDNIADNYKKLRRLQDQLVENKLANKTLSPSQERRYKKLKED
IIVDVKSLSLNQNRIDALVAQLYDINKRLMGYEGRLLRLADSYNVDRTDFLKQYQGAELD
PNWLRKVANLSTRGWKNFIAKEKETVRELRQDIQTLATETGLEITEFRRIVAMVQKGERE
ARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA
TWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLQMPL
EKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASL
TPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL
DS
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggtagccaaagcgacacaagcagacgacacacaggagcagagcacggacggccctgac
ggccctctgctggacctgtcggatgccgctgtcaaaaagatgatcaaagccgccaagaaa
cgcggctatgtcacctatgatgaactgaacgaggttctgccctcggagcaggtgtcttcg
gaaaagatcgaagacaccatgtccatgctttccgacatgggcatcaacgtgatcgattcc
gacgaagccgaagaaggcccggaagaagtcgatggcggcgatctggttgccgcaagcacg
acggcacttgccaagagcaccacgaaagagcccgccgaccgcaccgacgatcccgtgcgc
atgtatctgcgcgagatgggctcggtcgagctcctgtcgcgtgaaggcgaaatcgcgatt
gccaagcgcatcgaggctggccgcgaggcgatgattgcgggtctttgcgaaagcccgctg
accttccaggccatcatcatctggcgtgacgagttgaacgaagcccaggttcttctgcgc
gacattatcgatctggaagcaacctatgccggccctgatgccaaggccggcccggccgtt
gccaatgacgatgtggcgccgggcgaaggcaattcggaaaactccggcggtgcgtctgaa
gacaccgaaaacgaaagcgaagacggcgacggcgaggatgacgacgacgagtttgaatcc
aacgtttccctgtccgcgatggaagccgagctgaagccgggcgtcctggaaacctttgac
aacatcgccgacaactacaagaagcttcgccgcctgcaggatcagctggtggaaaacaag
ctggccaacaagaccctgtcgccaagccaggagcgccgctacaagaagctgaaagaagac
atcatcgttgatgtgaagagcctgtcgctcaaccagaaccgtatcgacgccctggttgcc
cagctctatgacatcaacaagcgcctgatgggctatgaaggccgtctgctgcgtctggcc
gacagctacaatgtcgaccgcacggacttcctgaagcagtatcagggtgccgagctcgac
ccgaactggctgcgcaaggttgccaatctttccacgcgcggctggaaaaacttcatcgcg
aaggaaaaggaaaccgttcgcgagctgcgtcaggacatccagacgctggccaccgaaacc
gggctcgaaatcaccgaattccgccgcatcgttgcaatggtgcagaagggcgagcgcgag
gcacgtatcgcgaagaaggaaatggtcgaggcgaacctgcgtctcgtgatctccatcgcg
aagaaatacaccaaccgcggcctgcagttcctggatctgatccaggaaggcaacatcggc
ctgatgaaggcggtggacaagttcgaataccggcgcggctacaagttctccacctatgcg
acatggtggatccggcaggcgatcacccgttcgattgccgaccaggcccgtaccatccgt
attccggtgcacatgatcgaaacgatcaacaagatcgtgcgtacgtcgcgccagatgctg
catgaaattggacgcgagccgaccccggaagagctggctgaaaagctgcagatgccgctg
gagaaggttcgcaaggttctgaagatcgccaaggaaccgatctcgctcgagacaccgatt
ggtgacgaggaagattcgcacctgggcgatttcatcgaggacaagaacgcggttctgccc
atcgatgcggccatccagtcgaacctgcgcgaaacgaccacccgcgtgctcgcctcgctc
actccgcgtgaggaacgcgtgctgcgcatgcgcttcggtatcggcatgaacaccgaccac
actctggaagaagtcgggcagcagttctcggttacccgtgaacgtatccgccagatcgaa
gcgaaggcgctgcgcaagctgaagcacccgagccggtctcgcaagctgcggtcgttcctg
gacagctaa
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