Roseibium algicola: B0E33_21285
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Entry
B0E33_21285 CDS
T04723
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lagg
Roseibium algicola
Pathway
lagg03420
Nucleotide excision repair
lagg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lagg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B0E33_21285
03430 Mismatch repair
B0E33_21285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lagg03400
]
B0E33_21285
Enzymes [BR:
lagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B0E33_21285
DNA repair and recombination proteins [BR:
lagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B0E33_21285
MMR (mismatch excision repair)
Other MMR factors
B0E33_21285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DUF3553
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AQQ05792
UniProt:
A0A0M6Y3H5
A0ABM6I5Z6
LinkDB
All DBs
Position
4593354..4595792
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AA seq
812 aa
AA seq
DB search
MTDPDGYDDSFDDPFQPIGTRAESAPAPVRPQGGIAARAMAARRAPDYLTGLNPEQRLAV
ETTEGPVLVLAGAGTGKTRVLTTRIAHILATGLARPSEILAVTFTNKASREMKERIAGFV
GGNVEGMAWLGTFHSICVKILRKHAELVGLKSSFSILDTDDQIRLIKQIIQAEGLDDKRW
TAKAFAGMLDGWKNRALGPKDIPEGEARAFANGKGRKLYEEYQERLSILNAADFGDLLLH
VITLFKTQPDVLKEYQRRFRYMLVDEYQDTNIAQYLWLRLLAQGNPNVCCVGDDDQSIYG
WRGAEVDNILRFEHDFKGATVIRLERNYRSTSHILAAASHLIAFNEGRLGKTLFTDFEEP
DHDLVSVASVWDSEEEARTIGDEIETLQSRGHSLNEMAVLVRASFQMREFEDRFVTLGLN
YRVIGGPRFYERMEIRDAMAYFRCVAQPADDLAFERIVNTPKRGLGDATLKLVHGVARAE
RIPLMQAASQLIDTEELKPKPRNALKSVLDNFERWRRQLDQMKHTELAEIILDESGYTEM
WRQDRSAEAPGRLDNLKELIRSMDEFESMAGFLEHISLVMDRDSADATDAVSIMTLHSAK
GLEFDTVFLPGWEEGLFPHQRALDESGRAGLEEERRLAYVGITRAKKRAKLYFASNRRIH
GLWQSTVPSRFLDELPPDHVEIAEASSSYGGYGGGGYGPSRFDSHDPFDKGSYSTPGWQR
AQRAKQSSSGFSDGGGRGYQSARQKRQGPLTIEGELVAKSVSDTPSQFSLGERVFHIKFG
YGAIKSIEGNKLTIDFEKAGVKKVIDSFVERH
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccggacgggtacgacgattcctttgacgatccattccagcctatcggcacg
cgggcggagtccgcgcctgctcccgtgcggccgcaaggagggatcgcggccagggcgatg
gcggcacggcgggcgccggactatctgacggggctgaacccggagcagcggctggcggtg
gaaacaaccgaagggccggttctggtgctggctggtgccggtacgggcaagacccgcgtg
ctgacaacacgcattgcgcatatcctggcaaccggcttggcgcggccgtccgaaattctg
gctgtcacgttcaccaacaaggcttcgcgcgagatgaaggaacgcattgccggttttgtc
ggcggcaatgtggaaggcatggcgtggctcggcacgttccattccatctgtgtgaagatc
ctgcgcaagcatgccgaacttgtcggcttgaaatcgtccttctcgatcctcgacaccgat
gatcagatccgccttatcaagcagatcatccaggccgaggggctggacgacaagcgctgg
acggccaaggcctttgccgggatgctggatggttggaaaaaccgggctctgggaccaaag
gatatcccggaaggcgaggcgcgggcgtttgccaacggcaagggccgaaagctctacgag
gaatatcaggagcgtctgtcgatcctgaacgcggccgatttcggtgatctgcttttgcat
gtcatcacgctgttcaagacgcagccggatgtcctcaaggaatatcagcgccgcttccgc
tacatgctggtggacgaatatcaggacaccaacatcgcgcaatacctgtggctgcgcctg
ctggcccagggcaacccgaatgtctgctgtgtcggtgatgatgaccagtcgatctacggc
tggcgcggcgcggaagtcgataacatcctgcgcttcgaacatgacttcaagggcgctacc
gtcattcgcctggagcgcaattaccgttcgaccagccatatcctggctgccgcatcccac
ctgattgcctttaacgaaggccggctcggcaagacgctgttcacggatttcgaggaaccc
gaccacgacctggtgtcggtggcctccgtctgggacagcgaagaagaagcgcgtaccatc
ggcgacgagatcgagacccttcagtcgcgaggtcattcgctcaatgaaatggcggttctg
gtgcgggcatccttccagatgcgcgagttcgaagaccggtttgtcacgttggggcttaac
tacagggtcatcggcggtccgcgcttttatgagcgcatggaaatccgcgatgccatggcc
tatttccgctgtgtcgcgcagcctgcggacgatctggcgtttgagcgcatcgtcaacacg
ccgaagcgcggtcttggcgatgcgacgctgaaactggtccatggtgttgcccgggcagag
cgtattccactgatgcaggcggcaagccagcttatcgataccgaagaactgaagccgaag
ccgcgtaacgcgctgaagtccgtgctcgacaacttcgagcgctggcggcgtcagcttgac
cagatgaaacacaccgaactggcggaaatcatcctcgatgagagcggctacaccgagatg
tggcggcaggaccggtcggcggaagcgccgggacgcctcgacaacctgaaggaactgatc
cggtctatggacgaatttgaatccatggccggtttcctggagcacatttccctcgtcatg
gaccgggacagcgcggatgcgaccgacgccgtatccatcatgacgttgcactcggccaag
gggctggaattcgacacggtgttcctgcccggctgggaagaggggctgtttccccaccag
cgcgcgctggatgaatccggtcgcgccggcctggaggaagagcgccggctggcctatgtc
ggcatcacccgggcgaagaaacgcgcaaagctctatttcgcgtccaatcggcgaattcac
ggcctctggcagtcaaccgttccctcacggtttctggacgagctgccgccggaccatgtc
gagattgccgaagcttcgtccagctatggcggctatggcggtggcggctacggaccgtcc
cggttcgacagtcatgatcccttcgacaagggcagctactccacgccgggttggcaacgt
gcgcagcgtgccaagcagtcctccagcggattttccgatggcggcggccgtgggtatcag
tccgcgcggcaaaagcgtcaggggccgttgaccatcgaaggagagctggtggcgaaatcc
gtcagtgacacgccatcgcaattctctctgggtgaacgcgtgttccacatcaagttcggc
tatggcgccatcaagtcgatcgagggaaacaagctgacgatcgactttgaaaaggcaggg
gtgaagaaggtcatcgacagtttcgtcgaacggcactga
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