Roseibium aggregatum: B0E33_24565
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Entry
B0E33_24565 CDS
T04723
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lagg
Roseibium aggregatum
Pathway
lagg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lagg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B0E33_24565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lagg03021
]
B0E33_24565
03400 DNA repair and recombination proteins [BR:
lagg03400
]
B0E33_24565
Enzymes [BR:
lagg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B0E33_24565
Transcription machinery [BR:
lagg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B0E33_24565
DNA repair and recombination proteins [BR:
lagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B0E33_24565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AQQ06360
UniProt:
A0A0M6XYZ0
LinkDB
All DBs
Position
5284259..5288458
Genome browser
AA seq
1399 aa
AA seq
DB search
MNHEVMNLFNQQAPAQTFDNIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERVLYFENYVVLEPGLTPLKQHQLLSEEDFIAAQDEYGEDAFTA
MIGAEAIREILMSMDLERESEKLRQEIAEATTELKPKKLAKRLKVIEAFMESGNRPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGFSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARTLMMSTNNILHPANGGPIIVPSQDIVLGLYYLSIMAEGEPGEGMVFGNTGEIHHALA
NKVITLHTKVKGRYRSIDAEGNPTSEIIETTPGRMLIAELLPKHHEVPFEVCNKLMTKKD
ISKMIDTVYRACGQKETVIFCDRIMQLGFKNACNAGISFGMDDMVIPDTKHKLVAETSSL
ATEYEQQYNDGLITQGEKYNKVVDAWAKCTDKIADEMMARIKAVQIDEETGRQKPMNSVY
MMSHSGARGSPQQMKQLAGMRGLMAKPDGSIIENPIISNFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIILEPDCGSTRGITVAPIVDAGNVIASLGMRVLGRT
TAEDVYNNQTGELLVPKGTLIDEKDVDAIEAAKVQQIKIRSVLTCETETGVCATCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFIESNVDGTIKIRNRS
VNRDSDGNLIAMVRNMSIVVIDSDGNERAVHRVAYGSKLHVDEGDAVKRGQRIAEWDPYT
RPMLAEVDGIVDFEDLVDGASVQETADEATGITKRVVIDWRSSQRGQDLKPAIVVKDEKG
SISKTDRGSDARLMLSVDAVLSVQPGASVKAGDVLARIPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRFGRDYKNKRRVIIEPAEEGVEPVEYLIPKGKHFHLQEGDAIE
KGEYILDGNPAPHDILAVKGVEALAAYLVNEIQEVYRLQGVTINDKHIEVIVRQMLQKVE
ITDPGDTEFFSGEQIDKIDFEEANRRAIDNARDPAKGVPVLLGITKASLQTRSFFSAASF
QETTRVLTDAAVNGKTDPLVGLKENVIVGRLIPAGTGGVMKRIRQIATHRDDLIQEAQRQ
QSSDSAAEGLLEDMTGAAE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgaggtcatgaacctgttcaatcagcaggctcccgcacagaccttcgacaat
atccggatttcgcttgcgagcccggaaaagatcttgtcctggtctttcggcgaaatcaaa
aagccggagaccattaactaccgtacgttcaagcctgagcgcgacggtctgttctgcgcg
cgcatctttggcccgatcaaggactacgaatgtctttgcggcaaatacaagcgcatgaaa
tacaaaggcgtcatctgcgaaaagtgtggcgttgaagtcaccctgtcgcgggttcgccgt
gagcgcatgggccacatcgaactggctgcgcctgttgcgcacatctggttcctgaagtcc
ctgccgagccgtatcggccttctgctcgacatgacgttgaaggacctggaacgcgttctg
tatttcgagaactatgttgttctcgagccgggcctgaccccgctcaagcagcaccagctt
ctgtcggaagaagacttcatcgccgctcaggacgagtatggcgaagatgccttcaccgcc
atgatcggtgccgaggcgatccgcgagatcctgatgagcatggatctggaacgcgagagc
gagaagctgcgtcaggagatcgccgaggcgaccaccgaactgaagccgaagaagcttgcc
aagcgcctgaaggttatcgaagcattcatggaatcgggcaaccgcccggagtggatgatc
atgaccgtggttccggttatcccgccggatctgcgcccgctggtaccgcttgacggtggc
cgtttcgcgacgtccgatctgaacgatctctaccgccgcgtgatcaaccgtaacaaccgt
ctgcgccgcctgatggaactgcgtgctccggatatcatcatccggaacgaaaagcgcatg
cttcaggagtccgttgacgccctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggttattaccgtgggt
ccggaactgaagctgcaccagtgcggtttgccgaagaagatggcgcttgagctgttcaag
ccgttcatctattcgcgcctcgacgccaagggtttctcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaacgtccggaagtctgggacatcctcgacgaagtcatccgtgag
cacccggttctcctgaaccgcgcgccgacgctgcaccgtcttggtatccaggccttcgaa
ccgacgctgatcgaaggcaaggccatccagctgcacccgctcgtctgctcggccttcaac
gccgacttcgacggtgaccagatggctgttcacgtaccgctttcgctggaagcccagctc
gaagcgcgtacgctgatgatgtcgaccaacaacattctgcatccggcaaacggtggcccg
atcatcgttccttcgcaggatatcgttctgggtctctactatctgtccatcatggcagaa
ggtgagccgggcgaaggcatggtcttcggcaacactggtgagatccaccatgcgctggcc
aacaaggtcatcacgctgcacaccaaggtgaagggccggtatcggtccatcgatgcggaa
ggcaatccgacttccgaaatcatcgagaccactccgggccgcatgctcatcgcggagctt
ctgccgaagcaccatgaagtgccgttcgaggtctgcaacaagctgatgaccaagaaggac
atctccaagatgatcgacacggtttaccgtgcctgcggtcagaaggagacggttatcttc
tgtgaccggatcatgcagcttggcttcaagaacgcctgtaacgccggcatctccttcggc
atggacgacatggtcattccggacaccaagcacaagctggtggccgaaacctcgtcgctc
gcgaccgaatacgagcagcagtacaacgacggtctaatcacccagggcgaaaagtacaac
aaggttgtcgatgcctgggcgaaatgtaccgacaagattgctgacgagatgatggcccgc
attaaggcggtccagatcgatgaggaaaccggtcgtcagaagccgatgaactcggtctac
atgatgtcgcactccggtgctcgtggttcgccacagcagatgaagcagctggccggcatg
cgcggcctgatggccaagccggacggttccatcatcgagaacccgatcatctcgaacttc
aaggaaggcctgtcggttctggagtacttcaactccacccacggtgcccgtaagggtctg
gccgataccgctctgaagaccgcaaactccggttacctgacccgccgtctggtggacgtc
gcccaggattccatcatcctggaaccggattgcggatccacgcgcggcatcaccgttgct
ccgatcgtcgatgccggtaacgtcatcgcttcgctcggcatgcgcgttctgggccgtacg
actgcggaagatgtctacaacaaccagaccggcgaactgcttgtccccaagggcacgctg
atcgacgagaaggatgttgatgccatcgaggctgccaaggttcagcagatcaagatccgc
tcggttcttacctgtgaaaccgaaaccggcgtctgcgcgacctgctatggtcgtgacctt
gctcgcggtacgcccgtgaacatgggtgaagctgtcggcgtcatcgccgcacagtcgatc
ggtgagcctggcacgcagctgaccatgcgtaccttccacattggtggtaccgcacaggtt
gtcgacagctcgttcatcgagtccaacgtcgacggcacgatcaagatccggaaccgttcg
gtcaatcgcgacagcgacggcaacctgattgccatggttcgcaacatgtccatcgttgtc
atcgacagcgacggcaacgagcgtgccgtgcatcgtgtggcctacggttccaagctgcat
gtcgatgaaggcgatgcggtcaagcgcggacagcggattgccgagtgggatccgtatacc
cgtccgatgcttgctgaagtcgatggtatcgtggacttcgaggatctggtcgatggtgcg
tccgttcaggaaacggccgacgaagcgaccggcatcaccaagcgtgtcgtcattgactgg
cgttcttcgcagcgtggtcaggatctcaagccggctatcgtcgtcaaggacgaaaaaggc
agcatttccaagaccgatcgtggctccgatgcccgtctgatgctttcagttgacgcggtt
ctgtccgttcagccgggagcttcggtcaaggctggtgacgttctggcccgtatcccgctg
gaaagcgccaagacaaaggacatcaccggtggtctgccgcgtgttgcggaactgttcgag
gctcgccgtccgaaggatcatgcgatcatcgccgaaatcgatggtacgatccgcttcggt
cgcgattacaagaacaagcgtcgcgtcatcatcgagccggcggaagaaggtgtcgagccc
gtcgaatacctcatcccgaaaggcaagcacttccatcttcaggaaggcgatgccattgaa
aagggtgagtacatcctcgacggcaacccggctccgcacgacatcctggcagttaaaggc
gtagaggcccttgcggcttacctcgtcaatgagatccaggaagtctaccgcctgcagggc
gtgaccatcaacgacaagcacattgaagtgattgtccgccagatgctgcagaaggtcgag
atcaccgatccgggcgatacggagttcttctccggcgaacagatcgacaagatcgacttc
gaggaagccaaccgccgggcgatcgacaatgcacgcgatcctgccaagggggtgccggtt
ctgctcggcatcaccaaggcatcgctgcagacgcgttcgttcttctccgccgcctccttc
caggagacgacccgcgtccttaccgatgcggctgtcaacggcaagaccgacccgctggtc
ggcctcaaggagaacgtcatcgtcggccgtctgatcccggccggtaccggtggagtgatg
aagcggatccgtcagatcgcgacgcatcgcgacgacctgatccaggaagcgcaacgtcag
cagtcttcggacagtgcagcggaaggccttctggaagatatgaccggtgcagccgagtaa
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integrated database retrieval system
