Roseibium algicola: B0E33_25565
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Entry
B0E33_25565 CDS
T04723
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lagg
Roseibium algicola
Pathway
lagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0E33_25565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lagg03019
]
B0E33_25565
Messenger RNA biogenesis [BR:
lagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B0E33_25565
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
RNase_J_C
Anti-Pycsar_Apyc1
Cuticle_1
Motif
Other DBs
NCBI-ProteinID:
AQQ06529
UniProt:
A0A0M6Y0G5
A0ABN4WXU2
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Position
5491050..5492735
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AA seq
561 aa
AA seq
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MASAKKNNNNNDIVFLPLGGVGEIGMNLGLYGYGPEDDRTWLIVDCGVSFAGPELPGIDV
VVPDIKFLEDEVDNIAGMVITHAHEDHYGGILHLWPFLKVPVYATAFTAGLLAAKTESEP
GAEEVPVTVVKQGERHKIGPFDVEFVAMAHSIPEPCALAIRTPAGMVLHTGDWKIDRTPG
VGLPIDLDRLAELGREGVMALVCDSTNAIRDGVSPSEADVAVELKKVMAKASKRIAVTTF
ASNVARIRAIAEAAAANDRDMVIVGRSMHRVIEVAGELGYLDGLKPFHDEEAYGYLPREK
TVLLCTGSQGEARAALARIAAGDHRNIALSKGDMVIFSSRTIPGNEKAVGEVLNNLADKD
VDIITDRDALVHVSGHPRRGELEQLYKLVQPKVVLPVHGEPLHLAAHAAFAKDLGVPEVV
RGKNGDIIRLSAGRAGIIDEAPSGILVKDGDILDDPEVTGVKERRKLSFAGAAVIALVVN
RSGELLDDPNVVLLGLPDTDDEGDPMEDIVIKAVRGAVTSIPKNRRKDKDLVAEAARRAA
RSEILNVWGKKTLCKVMVTQL
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggccaagaaaaacaacaacaacaacgacatcgtgtttctgcccctgggcggg
gtcggcgaaatcggcatgaacctcggtttgtacggctatggtccggaagatgaccggaca
tggctgatcgtcgactgtggtgtgagtttcgccggaccggagcttccgggcatcgacgta
gtcgttccggacatcaagttcctggaagatgaagtcgacaatatcgccggtatggtgatt
acccacgcacatgaagaccattacggcgggatcctgcatctgtggcccttcctgaaggta
ccggtctatgcaacggccttcactgccggtctgctcgcagccaagacggaaagcgagccg
ggagcagaagaggttccggtgacggtggtgaagcagggcgagcgccacaagattggtccg
tttgatgtcgaatttgttgcgatggcgcactccattccggagccctgcgcgctggcgatc
cgcacgcctgccggcatggttctgcacaccggcgactggaagatcgacaggacgcctggc
gtcggccttcccatcgatctggaccggcttgccgagctcggccgggaaggggtgatggcg
cttgtctgtgacagtaccaatgcaattcgtgacggtgtcagccccagcgaggcagatgtt
gccgtcgagctgaaaaaagttatggcaaaggccagcaagcgaattgcggtcaccaccttt
gcatccaacgtcgcccgcattcgggcgattgcggaagcagccgcggcgaacgaccgcgac
atggtgattgtcggccgctctatgcaccgggtgatcgaggttgccggagagcttggctat
ctggatggactgaagccgtttcacgatgaagaggcctatggctacctgccgcgggaaaag
accgtgcttttgtgcacgggatcgcaaggcgaagcccgcgctgccctcgccaggatcgca
gccggcgaccatcgcaacatcgcgctgtcaaagggcgatatggtcatcttttcttcgcgc
acgatccccggcaacgagaaagccgttggtgaggtgctgaacaaccttgccgacaaggat
gtcgacatcatcaccgaccgtgacgcccttgtgcatgtgtccggtcacccgcgcaggggc
gagctggagcagctttacaaactggtccagccgaaagtcgtgcttcccgtccacggggaa
ccgttgcatcttgccgcccacgccgcgttcgcaaaggacctcggggtgcctgaagtggtg
cgcggcaagaacggggacatcatccgcctgagtgcggggcgtgccggcatcatcgacgag
gcgccgtcaggcatcctggtgaaagacggcgatatcctggacgatccggaagtcaccggc
gtcaaggaacggcgcaagctttcgtttgcgggcgctgcggtgatcgcgctggtggtcaac
cgatccggggagctgctggacgaccccaatgttgtcctgttgggcttgccggacacggat
gatgaaggtgatccgatggaggacatcgtcatcaaggctgtcaggggcgctgttaccagc
atcccgaagaaccggcgcaaggacaaggatctggttgcggaggctgcgcgccgtgcagcc
cggtccgagatcctgaacgtctggggcaaaaagacgctctgcaaggtgatggtgacccaa
ctatag
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