Roseibium algicola: B0E33_26170
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Entry
B0E33_26170 CDS
T04723
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lagg
Roseibium algicola
Pathway
lagg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lagg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B0E33_26170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lagg03400
]
B0E33_26170
Enzymes [BR:
lagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B0E33_26170
DNA repair and recombination proteins [BR:
lagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B0E33_26170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
AAA_16
Cas3-like_C_2
SecA_DEAD
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AQQ06636
LinkDB
All DBs
Position
5619958..5623443
Genome browser
AA seq
1161 aa
AA seq
DB search
MFDSLLKDQANVTLAGVPDGAESYALARLLAETRAQGLALVFVARDATRMAMVSEALQFF
DPEVEILQLPAWDCLPYDRVSPNSAISARRLLALGQLARGMTDGKKTVLMTTLNAALQRV
PERSFMADQTFSMAPGNRVDMGAISTWLEMNGFSRTPTVRETGEYAVRGGIVDLFAPGAE
EPVRLDFFGDTLESIRSFNAETQRTSKQLKRLDLVPMSEVVLSEEAISRFRRSYLANFGA
ASREDVLYQSISDGRRYAGMEHWLPLFHDRLESLFDYIGDTPVVLDTSMSDAVRERVDQV
TEYYRARQEAREMGTSAGTVPYMPVEPASLYVTEEEWRAAVADRASAALDPFTPPPGSGK
TIVELGGRQGRSFAAERAAGDINIFDALTTHVRQLQKQGKRTVIACWSEGSRDRLGQILE
DHGLGAVKKADTLKDIEGLPAKTTALCVLGIEHGFELNDVVFIGEQDILGDRLVRKSRRK
SKGANVITEATGLSEGDLVVHVDHGIGRFIGLKTIEAVGAPHDCLELQYAGGDKLYLPVE
NIELLSRYGSEDQEAQLDKLGGGAWQARKAKLKKRILEIADGLIKTAAQRALKTAPVVET
PEGVYDEFATRFPYEETDDQLTAIDAVFDDLSSGRPMDRLVCGDVGFGKTEVALRAAFIA
AMSGRQVAVVVPTTLLARQHFKTFSERFHGLPINVAHASRLVPTKQLSLTKKGITDGSVD
IVVGTHALLGKSIEFRDLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQL
ALTGVRELSLIATPPVDRLAVRTFVSPFDPLVVREALLREHYRGGQSFYVCPRLADIAER
LEFLENQVPELKVAVAHGQMPPGELEDVMNAFYEGKYNVLLSTTIVESGLDIPTANTLIV
HRADMFGLAQLYQLRGRVGRSKTRAYALFTVPANKTLTATAERRLKVLQSLETLGAGFQL
ASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAQLKDGGADFGDEQWSPQINIG
TPVLIPENYVADLQLRLQLYRRLGDVTEAEEIDSFGAELIDRFGPLPEEVQHLLKIVFIK
GLCRKANVEKVDAGPKGIVITFRNSEFSNPAGLVSYIAEQGVLAKIRPDQKVVLTRDWDK
TDARLKGTATVLTKLARLAAA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgacagcctgctgaaggatcaggccaacgtgacgcttgccggcgttccggatggg
gccgaaagctacgctcttgcaaggctgctcgccgaaacccgggcgcagggtcttgccctg
gtatttgtcgctcgcgacgccacgcgcatggccatggtcagcgaagcacttcagttcttc
gatcccgaggtcgaaatcctgcagttgcccgcctgggattgcctgccatacgaccgcgtt
tcgcccaattctgcgatcagtgcacgccgcttgctcgcgctcggccaacttgcgcgtggc
atgacggacggcaagaaaaccgtgctgatgacaacgctcaacgcggcacttcagcgtgta
cccgagcgctctttcatggccgaccagaccttctccatggcaccgggtaaccgggtcgac
atgggagcgatctccacatggctggagatgaacggtttttcgcgaactccgaccgttcgt
gaaaccggtgaatatgctgttcggggcggtattgtcgacctcttcgcgcctggagcggag
gagcccgtgcggctcgatttcttcggcgatacccttgaatcgatccgctcattcaacgcg
gaaacacagagaacctccaaacagctgaaacgccttgacctggttccgatgagcgaggtc
gtattgtccgaggaagccatctcccgcttccgtcgttcctatcttgccaattttggcgca
gccagccgagaagacgtgctctatcagtcgatcagtgacggtcgccgatacgcaggcatg
gagcattggctgccactgttccacgaccgactggaaagtctgttcgattacatcggcgat
acgcctgtcgttctggacaccagcatgagtgacgcagtccgcgaacgcgttgaccaggtc
acggaatactaccgcgcacgtcaggaagcgcgcgaaatggggacaagcgccggaacggtg
ccttacatgccggtggaaccggccagtctctatgtcaccgaagaggaatggcgtgcagct
gtcgccgaccgcgcaagcgccgcacttgatccctttacgccgccaccaggcagcggcaag
acgattgtcgaactgggtgggcgtcagggccggagttttgctgccgaaagggcagcgggc
gacatcaacatttttgacgcgctgacaactcacgtgcgccaactgcaaaagcagggcaaa
cgcacggtgattgcctgctggtcggaaggttcgcgcgaccgtctcggccagatccttgaa
gaccatggtcttggagcggtcaagaaagcggacacgctgaaggacatcgagggacttccc
gccaagacaaccgcgctgtgtgtactgggcatcgagcatggctttgagctcaatgacgtc
gtcttcatcggcgaacaggacattctcggcgacaggctggttcgcaagtcgcgtcgcaag
tccaagggcgccaacgtcattaccgaagcgacgggcctttcggaaggcgatctcgtcgtt
cacgtggaccacggtatcggcaggttcatcggtctgaaaacgattgaagctgtcggcgcg
ccgcatgactgcctggaacttcaatatgccggtggcgacaaactctatcttccggtcgaa
aacatcgagcttctgtcccgctatggctcggaagaccaggaagcccaactcgacaagctc
ggtggcggtgcctggcaggcacgcaaggccaagctcaagaagcgcattctggaaatcgcc
gacggcctgatcaagacagcagctcaacgcgctctcaagaccgcgccggtggtggaaaca
ccggaaggcgtctacgacgagttcgcgacgcgattcccctacgaggaaacagacgatcag
cttacggcgatcgatgcggttttcgacgatctgtcttcagggcggccgatggatcggctg
gtttgcggcgacgttggattcggcaagacggaagtggcacttcgtgcagctttcattgcc
gccatgtccgggcgccaggttgcggtggtggtgccgacgacccttttggcccgtcagcac
ttcaagaccttctccgagcgctttcatggtctgccgatcaacgtcgcccatgcatcccgc
ctggtgcccaccaagcaactgagcctgaccaagaaaggcatcaccgacggatcagtcgat
attgtcgtcggcacccatgcgttgctgggcaagtccatcgaattccgggatctcggcctg
cttatcatcgacgaggagcagcatttcggggtcaagcacaaggagcggctgaaggagctg
aaatcggacgttcacgttttgacgctatcggcgacaccgatcccgcggaccttgcagctt
gcgctgaccggggtacgcgaactgtcgctgatcgcaacgccgcctgtggaccggctggca
gtgcgcacgttcgtttcgccgttcgatccgttggtggttcgagaagcccttctgcgcgag
cattacagaggcgggcagagcttctatgtctgtccgcgccttgccgacattgcagagcgc
ctcgagttccttgaaaatcaggtgcctgaactgaaagtggcggttgcccacggccagatg
cctccgggggaactggaagacgtcatgaacgccttctatgagggcaagtacaacgtcctg
ctgtcgacaacgatcgtggaatccgggctggatattccgaccgcgaacacgttgatcgtg
caccgggcggatatgttcggccttgcacagctctaccagctgcgcggccgtgtcggccgg
tccaagacccgcgcctacgcgctctttacggttcctgccaacaagacgttgacggcgact
gccgagcgccgattgaaagtccttcagtctctcgaaacgttgggtgcaggcttccagctg
gccagccacgatctcgacattcgcggggccgggaacctgcttggtgaggagcagtccggg
catatcaaggaagtcggatttgaactgtaccagcagatgctggaagaggcggttgcccag
ctcaaggatggtggcgcggattttggcgacgagcagtggtcgccgcaaatcaacatcggc
acgcctgtgcttatcccggaaaactacgtcgccgacctgcaactgcgtctgcagctttac
cgccgtttgggcgatgtcaccgaggcggaggaaatcgattccttcggcgcggaactgatc
gaccgctttggaccgttgccggaagaagtgcagcatctcctcaagatcgtcttcatcaag
gggctttgccgcaaggccaatgtcgagaaggtcgatgccgggccgaaagggatcgtcatc
acgttccgcaatagcgaattctccaatccggccggtctggtttcctacattgccgagcag
ggtgtccttgcgaagatccgaccggatcagaaggtggtcctgacgcgcgattgggataaa
accgacgcacgtttgaaagggaccgcaacggtgctgaccaagttggcgcgcctggcggcc
gcctga
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integrated database retrieval system
