Ligilactobacillus agilis: BEN83_00315
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Entry
BEN83_00315 CDS
T05198
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lagl
Ligilactobacillus agilis
Pathway
lagl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lagl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BEN83_00315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lagl03019
]
BEN83_00315
03400 DNA repair and recombination proteins [BR:
lagl03400
]
BEN83_00315
Enzymes [BR:
lagl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BEN83_00315
Messenger RNA biogenesis [BR:
lagl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BEN83_00315
DNA repair and recombination proteins [BR:
lagl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BEN83_00315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ASR40060
LinkDB
All DBs
Position
complement(65379..67151)
Genome browser
AA seq
590 aa
AA seq
DB search
MTPNETLKHYFGYDHFRPGQAEIINQVLAKKNTLAIMPTGGGKSLCYQIPALILPGITLV
ISPLIALMKDQVDALNDNGIPAAFINSSLDYASIQNNLSLALTDQLKLLYIAPERLENPH
FLNELASLNISLVAIDEAHCISQWGHDFRPSYLNLQASLATLGQDFPTLALTATATDQVA
QDICQQMQIDPQQIIKTGFSRPNLIFKVAKGQDANTFCLNYLRKNPHQAGIIYAATRKKV
EQLGSFLSKHGQKVAIYHAGLSEETRHQAQEDFIFDRVNVIIATNAFGMGINKSNVRFVI
HAQAPGSLEAYYQEAGRAGRDGLLSEAILLFHEQDMMTQRFFIDNSDAQADYQTIQYHKL
QAVSHYANTEECLQRFIVRYFGEETEPCQKCGNCTDERASEDITLASQKILSCVVRMRGN
FGKKIVAQVLFGSTASKITQFNLQTLSTFGIMHDLRLKEIEALIDYLLASGYLKTAAGKY
PTVAITALGVQVLKGKQGVKRKVTKAKVIKSNQAVDRALFERLRNLRLDLALKQEVPPYV
IFPDKTLEELCLLKPKQLDDLLAISGIGQAKLAKYGQLFLAEIRAYQNET
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgacacctaatgaaacattaaaacattactttggttacgaccacttccggcccgggcaa
gcagaaattattaaccaggttctcgctaaaaaaaataccctggccatcatgcctaccggt
ggcggcaagtcactttgttatcagattccggccctaatcttgcctggcatcaccctggtc
atttcccccttaattgccctcatgaaagaccaggtcgacgccttaaatgacaacggcatc
ccggctgccttcatcaacagtagcctcgattacgctagcatccaaaataacctctcgcta
gcgctgaccgaccagttaaagctgttgtacattgcccctgagcgcttggaaaacccccac
tttctaaacgagttggctagccttaacatctcgctagtcgcaatcgacgaggcccactgt
atctcccagtggggccatgactttcggccaagctatttaaacttacaagctagcctagct
actttaggacaggactttcccaccttggctctgactgccaccgcaactgaccaggtcgcc
caagacatctgccagcaaatgcaaattgacccacagcagattatcaagaccgggtttagc
cggcctaacctaatctttaaggtcgctaagggacaagacgctaacaccttttgccttaac
tacctgcgtaaaaacccccaccaggctggaatcatttatgcggccactagaaagaaggtt
gaacaactaggcagctttttaagtaagcacggacaaaaagtcgctatctaccacgctggt
ttgtctgaagaaactcgccaccaagcccaggaggacttcatcttcgaccgcgttaacgtc
atcatcgccaccaacgcctttggaatgggcattaataagagtaacgtccgctttgtcatc
cacgcccaggccccgggcagcctggaagcctactaccaagaagccggccgggccggacgc
gatggcctgcttagtgaggccatcttactctttcacgaacaagacatgatgacccagcgc
ttctttattgataactccgacgcccaagccgactatcaaactatccagtaccacaagctc
caagcagtcagccactatgccaacaccgaggagtgtctccaacgcttcatcgtccgctac
tttggtgaggaaactgagccctgccagaagtgcggcaactgtacggacgaacgtgcatca
gaagacatcaccctggctagccaaaagattctttcctgcgtcgtccgcatgcggggcaat
ttcggtaagaaaatcgtcgcccaggtcctctttggctccactgccagcaagattacccag
tttaacctccaaaccctgtcaacctttggcatcatgcacgatttacgtctcaaagaaatt
gaagccttaatcgactacctcctagccagtggctacctaaaaactgcggccggtaagtat
ccgaccgttgccatcaccgccctaggggtgcaagttttaaagggcaaacaaggcgtcaag
cgtaaggttaccaaggctaaggtcattaagtctaaccaggccgttgaccgggccttattc
gaacggctccgcaacctccggttggacttggccctcaaacaagaagttcccccttacgtt
atcttccccgacaaaaccttggaagaactttgcttgctaaaacctaagcaactcgacgac
ctcctggcaatctcaggaattggccaggctaagctggcaaaatacggtcaacttttctta
gctgaaatccgcgcctatcaaaacgaaacctaa
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