Ligilactobacillus agilis: BEN83_04305
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Entry
BEN83_04305 CDS
T05198
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lagl
Ligilactobacillus agilis
Pathway
lagl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lagl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BEN83_04305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lagl03021
]
BEN83_04305
Transcription machinery [BR:
lagl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BEN83_04305
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
FAM176
Motif
Other DBs
NCBI-ProteinID:
ASR40760
UniProt:
A0A231QM89
LinkDB
All DBs
Position
complement(844900..846039)
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AA seq
379 aa
AA seq
DB search
MAEEKKNNNFDEVAYNKRLREVIRAYKPKKEISYTELTNQLVKPFGLDADQMDKLIGRIE
DAGISVVDENGNPSEASLMAADKEAKEAKEDAEKEEEETASTVKINDPVRMYLKEIGRVN
LLTADEEVQLALRIEEGDEEAKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMK
AVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDL
GREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEH
AAYELLKEQLESVLDTLTDREENVLRLRFGLDDGGRTRTLEEVGKVFGVTRERIRQIEAK
ALRKLRHPSRSKQLKDFLE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
ttggcagaagagaagaagaacaataattttgatgaagttgcatacaacaaacgactccgg
gaagtaattcgggcctataagcctaaaaaggagatctcttatacagaattgaccaatcaa
ttagttaagccattcggtcttgacgctgaccaaatggataaattgattggccggattgag
gatgcaggtatttctgttgtagacgaaaatggtaatccaagtgaagctagtttgatggct
gctgacaaagaggctaaggaagctaaagaggatgccgaaaaagaagaggaagaaactgct
tcaactgttaagattaatgacccagttcggatgtatttaaaagaaattgggcgggttaac
ttgttaaccgctgatgaagaggttcagttagccttacgaattgaagaaggcgatgaggaa
gctaagcaacgcttggctgaagccaacttgcggttagtagtttcgattgctaaacgctat
gtaggccggggcatgtcatttcttgatttaattcaagaaggaaacatgggcttgatgaag
gcggtcgagaagtttgactaccggaaagggtttaaattctcaacttatgctacttggtgg
attagacaagcaattacccgtgcgattgctgatcaagcacggacaatccggattccagtt
cacatggtagaaacaattaacaagttaattaggattcaacgccaaatgctacaagactta
ggccgggaaccaacgcctgaagaaattggggcagaaatggatatgccgactgaaaaagtt
cgtgagattcttaaaattgcgcaagaacccgtttccttggaaacaccaattggtgaagaa
gacgattcccacttaggtgattttatcgaagatcaagatgcgactagtccagctgaacat
gctgcttatgagttgttaaaagaacaattagaaagtgtcttggatactttaaccgaccgg
gaagaaaacgtcttacgtctccgctttgggttggatgatggtggtcggacccggactctt
gaagaagttggtaaggtctttggggttacgcgtgaacgaattcgccagattgaagctaag
gctttaagaaagttacggcatccatcacgttctaagcaattaaaggactttttagagtaa
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