Ligilactobacillus agilis: BEN83_06485
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Entry
BEN83_06485 CDS
T05198
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
lagl
Ligilactobacillus agilis
Brite
KEGG Orthology (KO) [BR:
lagl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lagl03016
]
BEN83_06485
Enzymes [BR:
lagl01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
BEN83_06485
Transfer RNA biogenesis [BR:
lagl03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BEN83_06485
Prokaryotic type
BEN83_06485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
ASR41140
LinkDB
All DBs
Position
complement(1257537..1258448)
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AA seq
303 aa
AA seq
DB search
MDGILALYKERGMTSNDAVFKCRKLFKTRRVGHSGTLDPNVDGVLPICVGKATKVVNYLM
DSGKVYMGQIILGFATETEDLDGAVVEQQRLVRPFSDQEIDQAMQALCGDLIQIPPMYSA
IKVNGRRLYDYARKGEEVVRPKRQIHVDYFKQTKPSSFDENRGQQTIYFEVGCGKGTYVR
TLAVDLGKKLGVPAVMSDLTRLKSGGFMIGQAVSLAQLESLSADQLAQALAPIDHALGAY
AHHELSEKQWAFVKNGGFLAPSYVNGGQVVPKLVLMYQGKARAVYKYNEPKARYQPEQMI
DLS
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggacggaatattagctttatataaagagcggggcatgaccagtaacgatgcggtcttt
aagtgccgtaagcttttcaagaccaggcgggttggtcacagcggcacgcttgaccccaat
gtggacggggttttaccaatctgtgtgggaaaagccaccaaggtcgttaactacctgatg
gattcgggcaaggtttacatgggccaaatcatcctgggctttgcgacggaaaccgaggat
ttagacggggcagtcgttgaacaacaacgcttggtccgcccttttagtgaccaagaaatt
gaccaggccatgcaggctttgtgtggggatttaattcagattccgcccatgtattcggcc
atcaaggttaacggtcgccgcctttatgactacgccagaaagggcgaggaagttgtgcgg
cctaaacgccaaattcacgtcgactacttcaagcaaaccaagccaagtagctttgacgaa
aaccggggccagcaaaccatttactttgaggttggctgtggcaaggggacctatgtcaga
accttggccgttgacctgggtaaaaagctcggggtgccggcggtgatgtcagatttaacc
cgcttaaaaagtggtggctttatgattggccaagctgtcagcctcgcccagcttgagagt
ttaagtgcagaccagttggcccaagcgctggcgccaattgaccacgccctaggagcttat
gcccaccatgaactaagcgaaaagcagtgggcctttgtgaaaaacgggggcttcctagcg
cctagctacgttaatggcgggcaagttgttcctaagttggtcttgatgtatcaaggcaag
gcccgggcggtctacaagtataacgagccaaaggcgcgctaccaaccggagcaaatgatt
gatttaagttga
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