Lysinibacillus agricola: FJQ98_08295
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Entry
FJQ98_08295 CDS
T07480
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lagr
Lysinibacillus agricola
Pathway
lagr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lagr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJQ98_08295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lagr03019
]
FJQ98_08295
03400 DNA repair and recombination proteins [BR:
lagr03400
]
FJQ98_08295
Enzymes [BR:
lagr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FJQ98_08295
Messenger RNA biogenesis [BR:
lagr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJQ98_08295
DNA repair and recombination proteins [BR:
lagr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FJQ98_08295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SNF2-rel_dom
AAA_22
DUF5637
DEAD_2
Motif
Other DBs
NCBI-ProteinID:
QQP14008
LinkDB
All DBs
Position
1742266..1743708
Genome browser
AA seq
480 aa
AA seq
DB search
MELEQTLAKHFGYTAFRPGQKEVIGAILEGKDVLALLPTGMGKSLCYQLPGYILQKPVLI
VSPLLSLMQDQVEELKRIGEKRVVALNSFLTVSEKRYVLHFLEQFRFIFTSPEMLLQQQV
QDKLSQMQLGLIVVDEAHCISQWGFDFRPDYLRIGQWFSQVNRPPVLALSATATNKVVNE
IRDTLSLHTPFEFLYNVDRPNIHLGRVIFEDRADKVHWIIQHIKETAGPGILYMSSRKRA
EQYSEALIQAGIRAAAYHAGYGAEDRQFTQQQFIDGELDWIVATNAFGMGINKSDIRQIV
HETMPANVENYMQEIGRAGRDGQPALAILLYCDGDEELAKFVVTGDLPTSGHVDRYQELL
NQQVQPSQMLKNGELSETAFRVLDYWLQQETMEQVKVRLNHLALEKYRAVDEMQKITQTK
DCIRTQLVGYFGQKLLKKPENCCENCGIHYDEINKVRLKEEKKIEMIPWKSRLKQLLMGF
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggaacttgaacaaacattggcaaagcattttggctacacagcatttcgtccaggtcaa
aaagaggtcattggggcaattctagaaggaaaagatgttcttgctttattaccaacaggg
atgggtaagtcactttgttaccagttaccagggtatatcttgcagaagccagtattaatt
gtttctccgctactttcgctcatgcaggatcaagtagaggagctaaaacgcattggtgaa
aagagagtagtcgccttaaattcatttttaaccgtaagtgaaaaacgatatgtattacat
tttttagagcagtttcgttttattttcacatcaccagaaatgcttttacagcaacaagtt
caggacaagctctcacaaatgcagctaggtcttatcgtagtagatgaggcacattgtatt
tctcagtggggctttgattttcgaccagattatttacgaattggacaatggttctcacaa
gtaaatcgtccaccagttttagcattatcagcgactgcgacgaacaaagtagtcaatgaa
atacgagatacattgtcgctacatacaccatttgagtttttgtacaatgtggatcgacca
aacattcatcttggacgtgtcatttttgaggacagggcagataaagtacactggattatt
caacatataaaagagactgcaggaccaggtattctatatatgtcctctcggaagcgtgca
gaacagtacagtgaagcactaatccaggcaggtatacgcgcagcagcgtatcatgcaggc
tatggggctgaggatcgccagtttactcagcagcaatttattgacggagaactagactgg
attgtggcaacaaatgcttttgggatgggtatcaataagtcagatattcgtcaaattgtc
catgaaacgatgcctgctaatgtagaaaattatatgcaggaaattggccgtgcggggcgt
gatggtcaaccggcgctcgcaattttactttattgtgatggtgacgaggagcttgcgaaa
tttgttgtaacaggcgatttgccaacatctggtcatgtcgatcgttatcaggaactacta
aatcaacaagtacagccttcacaaatgctgaaaaacggagagttgagtgagactgctttt
cgtgttcttgattactggctacaacaagaaaccatggaacaagttaaagtacgtctaaat
catttggcactggaaaaataccgtgctgtcgacgaaatgcaaaaaattactcagacaaaa
gactgtattcgcacgcagctagtcgggtattttgggcaaaaattgctgaaaaaaccggaa
aactgttgtgaaaattgtggaatccattatgatgaaatcaataaagtacgcttgaaggaa
gagaaaaaaatagaaatgatcccgtggaaaagtcggttaaagcaacttttgatgggtttt
tag
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