Lysinibacillus agricola: FJQ98_23055
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Entry
FJQ98_23055 CDS
T07480
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lagr
Lysinibacillus agricola
Brite
KEGG Orthology (KO) [BR:
lagr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lagr03009
]
FJQ98_23055 (rlmD)
Enzymes [BR:
lagr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FJQ98_23055 (rlmD)
Ribosome biogenesis [BR:
lagr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FJQ98_23055 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
PrmA
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_15
TPMT
RrnaAD
Methyltransf_11
Methyltransf_32
Methyltransf_23
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
QQP15079
LinkDB
All DBs
Position
complement(4604575..4605948)
Genome browser
AA seq
457 aa
AA seq
DB search
MSAPVKKNDRLTVYIEDLTHDGNGVAKVDGYPLFIQEALPNETAEVHVLKTLKNYGFAKV
VDILKPSPDRVEAPCAYFKQCGGCQLQHLSYEGQLKWKENMVRNVMQRIGKIDAPVLPVK
GMKEPWHYRNKAQIPFSSNEAGQAIAGFYKTKTHSIVDMERCLIQTGEADAILAGLKKEL
AAIGIRPYNEQTHEGMLRHVVIRKARATGEVMVVLVTKKKKFPQKEAAVATIQKLVPNVT
SIMQNVNSDKTNVIFGDETVNLWGKDVIIDTIGDVRFEISARSFYQVNPEQTEVLYKQAL
DYADLQGDERVIDAYCGIGTISLFLAQKAKAVMGVEIVPQAIEDAKRNAELNGFTNTYFE
AGPAEEVIPRWYKEGKEADVLVVDPPRKGCDEALLKTILEQRPKRVVYVSCNPGTLARDL
RILEDGGYQTQEIQPVDMFPHSTHVECVSQLILKEGN
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcacccgtgaaaaagaatgaccgactaacagtttatatagaagatttaacacat
gatggcaatggcgtcgcaaaggtcgatggttatccattatttattcaagaggcacttcct
aatgaaacagcggaagtacatgttttaaaaaccttaaaaaattacggctttgcgaaagtc
gtagatattcttaagccatcgccagaccgagtagaggctccttgtgcatatttcaagcaa
tgtggcggctgccaattacagcacctgtcctatgaagggcagttaaagtggaaagagaat
atggtgcgtaatgtgatgcaacgcattggtaaaattgatgcgcctgttctacctgtgaaa
ggcatgaaagagccttggcattaccgtaataaagcacaaattcctttctcctcaaatgaa
gcaggacaagcgattgctggcttctataaaacgaaaacgcatagcattgtagatatggag
cgttgcttaattcagacaggcgaagcggacgctattcttgcaggcttgaaaaaggaatta
gcggcaatcggtattcgaccatataacgaacaaacacatgagggaatgttgcgccacgta
gttattcgtaaagcacgagcaactggtgaagttatggttgttctcgtaactaaaaagaaa
aaattcccacaaaaagaagccgctgttgcaacaatccagaagcttgtcccgaatgtaaca
tccattatgcaaaacgttaacagcgacaaaacgaacgttattttcggtgatgaaaccgta
aacctatggggtaaggacgttattattgatacaattggcgatgttcgctttgaaatttca
gcccgttcattttatcaagtaaaccctgagcaaacggaagtgctatacaagcaagcatta
gactacgctgacttgcagggtgatgaacgagtaattgatgcttactgtggtataggcacc
atctccttattccttgcgcaaaaagcaaaggctgtcatgggcgttgaaattgtcccacaa
gcaattgaagatgcgaagcgtaacgcagagttaaatggttttaccaacacctattttgag
gctgggccagcagaggaagtcattccacgctggtataaggaaggcaaggaagccgatgtc
ctagttgtcgatccaccgcgtaaaggctgcgatgaagcgcttcttaagacaattttagag
caacgtcctaaacgagttgtatatgtatcatgtaacccaggaacacttgcacgtgacctc
cgtattttggaggatgggggctatcaaacacaggaaattcaacctgtggatatgttcccg
cattcgacgcatgttgagtgtgtctcgcaactcattttaaaagaaggcaactaa
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