Lysinibacillus agricola: FJQ98_23775
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Entry
FJQ98_23775 CDS
T07480
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lagr
Lysinibacillus agricola
Pathway
lagr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lagr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJQ98_23775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lagr03019
]
FJQ98_23775
03009 Ribosome biogenesis [BR:
lagr03009
]
FJQ98_23775
Enzymes [BR:
lagr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FJQ98_23775
Messenger RNA biogenesis [BR:
lagr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJQ98_23775
Ribosome biogenesis [BR:
lagr03009
]
Prokaryotic type
rRNA helicases
FJQ98_23775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QQP12083
LinkDB
All DBs
Position
complement(4756945..4758477)
Genome browser
AA seq
510 aa
AA seq
DB search
MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNK
PQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSERQTLL
FSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDILSRLLNVHQP
ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTK
KRMTPLRPPTTDEALVGQQRLSMETLEGLIANNDLGDYRPLATELLENHDAIDVVAAALR
SLTKEPDDSPVTITEERPLPMRRERSNSRGGDRGRGGNRSFNGRRDGGRGGDRRGGNGGN
GGNRRDGGRRDGGRREGGQGRSRAPRRHED
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagcgaatctacattacgctctgtaaagcgtatg
ggatttgaagaagcaacaccaatccaagaaggtactatccgttttgccattgaaggtcgc
gatgtattaggccaagcgcaaacaggtactggtaaaactgccgctttcgggattccactt
atcgaaaagatcgatccaaaaaacccaaatatccaagcattagtaattgctccaactcgt
gaattagccattcaagtttctgaagagctttataaaattggttatgacaaacgcgtaaaa
ttattatcagtttacggtggtcaagaaatcggccgtcaaattcgtgcactgaaaaataaa
cctcaaattatcgtaggtacacctggtcgtataattgaccatattaatcgtcgtacttta
aaattagaagatgttcaaacattggtacttgatgaagctgatgaaatgttaaacatgggc
tttatcgatgacattaattcaatcttagaaaatgtgccttctgaacgtcaaacattattg
ttctcagcaacaatgccaccagcaatccgtaaaattgctgagacatttatgcgtgatcca
gaaatcgtaaaaattaaggctaaagaattaacagttgataacatcgatcaatattttgtg
aaatctgctgagcgtgaaaaattcgacattttatctcgtttattaaacgttcaccaacca
gaacttgcaatcatctttggacgtacaaaacgccgcgtagatgaacttgcacaagcgtta
tcaattcgtggttaccttgctgaagggattcatggtgatttaagccaagcgaaacgtatt
tccgtattacgtcaatttaaagaaaataaaattgatattcttgtggcaacagatgtagct
gctcgtgggcttgatatttctggtgtaacacatgtttataactttgatattcctcaagat
cctgagtcttatgttcaccgtatcggtcgtactggtcgtgcaggtaaatcaggtcttgcg
gtaacatttgtaacacctcgtgaaatgggttacttacgtattgtagaagaaacaacgaaa
aaacgtatgacaccacttcgtccaccgacaactgacgaagctttagtgggtcaacaacgc
ctatctatggagacactagaaggtcttattgcgaacaacgacttaggtgattatcgtcca
cttgcgacagaattacttgaaaaccatgatgcaatcgatgttgtagctgctgcacttcgt
tcattaacaaaagagccagatgactcgccagtaacaattactgaagaacgaccattacca
atgcgtcgtgagcgttctaacagtcgtggtggagatcgtggacgtggcggtaaccgtagc
tttaacggacgtcgagatggcggacgtggcggagatcgtcgtggaggaaatggtggaaat
ggtggaaatcgtcgagatggcggacgccgtgatggaggtcgccgtgaaggtggacaaggt
cgttctcgtgcaccacgtcgtcacgaagattaa
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