Lysinibacillus agricola: FJQ98_25660
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Entry
FJQ98_25660 CDS
T07480
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lagr
Lysinibacillus agricola
Pathway
lagr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lagr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FJQ98_25660 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lagr03021
]
FJQ98_25660 (rpoC)
03400 DNA repair and recombination proteins [BR:
lagr03400
]
FJQ98_25660 (rpoC)
Enzymes [BR:
lagr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FJQ98_25660 (rpoC)
Transcription machinery [BR:
lagr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FJQ98_25660 (rpoC)
DNA repair and recombination proteins [BR:
lagr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FJQ98_25660 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QQP12417
LinkDB
All DBs
Position
complement(5115213..5118899)
Genome browser
AA seq
1228 aa
AA seq
DB search
MIDVNEFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEEVIYFASYVVIEPGATNLESKQLLSEKEYRAYREKFGNTFEASMGAEAIKKLLG
KIDLEDETQSLKEELKSAQGQRRTRAIKRLEVVESFRNSGNSPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLNNDVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREAARGEGTIFYGPNEVLIAYDTGHVHLHTRIAIK
ASSLNNPTFTEEQNNMFLLTTVGKVIFNEILPKSFPYINEPTDFNLEQETPDKYFVNLTI
DEETLKELEADAAYNGLDEKGKVEAQRTAVLRKHFASVPVVNPFRKKFLGNIIAEVFKRF
HITETSKMLDRMKNLGFKYSTRAGITVGVSDIVVLPDKGEILAEAQEKVDKVQAQFRRGF
ITEDERYDRVISSWSAAKDEIQSKLMKSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLM
ANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDV
IVREDDCGTDRGLTIGALMEGTELIEALDERIVGRHTKKTIYHPETGEVILAKDGLIDQD
IARIIIELGIEEVTIRSAFTCNTKHGVCKKCYGMNLATGEEVEVGEAVGIIAAQSIGEPG
TQLTMRTFHTGGVAGDDITQGLPRIQEIFEARNPKGQSVISDIAGTVSDITEIREGLKEI
TIEGEVETRKYAAPYNARLKVQEGDFVERGQVLTEGSIDPKQLLKVKDVSTVQEYLLKEV
QKVYRMQGVEIGDKHIEVMVRQMLRKVRVIEAGDTELLPGSLLDIHQFSEANADAVLKGK
NPATCRPVILGITKASLETESFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLV
PAGTGMQRYRQIRIEKDELDTENLISAE
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaatgaatttgaatatatgaaaattggtttagcttctcctgacaagatt
cgttcttggtcatacggtgaagttaaaaaacctgaaacaattaactatcgtacattaaaa
ccagaaaaagatggtttattctgtgagcgtattttcggtccaactaaggattgggaatgt
cattgtggtaaatacaagcgtgtacgctataaaggcgtagtttgtgatcgttgtggagtt
gaagtaacacgcgcgaaagttcgtcgtgaacgtatgggccacatcgaattagcagcacca
gtttctcatatctggtacttcaaaggtattcctagccgtatgggtcttattttagatatg
tccccacgtgcattagaagaagtaatttactttgcatcctacgttgtaattgagccaggt
gctacaaacttagaaagtaaacaactactttctgaaaaagagtaccgtgcataccgtgaa
aaattcggtaacacattcgaagcgtctatgggtgcagaagcaattaagaaattgctaggc
aaaattgatcttgaagatgaaactcaatctttaaaagaagagttgaaatcagcacaaggt
caacgtcgtactcgtgcaattaaacgtcttgaagttgttgaatcattccgtaactcaggc
aactctcctgaatggatgattttagatgtactaccagttattccaccggagcttcgtccg
atggtgcaattagatggtgggcgttttgctacttctgacttaaatgatttatatcgtcgt
gtaatcaaccgtaataaccgtttgaaacgtttactagatcttggtgctccaagtatcatc
gtacaaaacgaaaaacgtatgttacaagaagctgttgatgcattaattgataatggtcgt
cgtggtcgtcctgtaacaggtcctggtaaccgtccattaaaatcactttcacatatgctg
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactactctggt
cgttcggttatcgtagtaggtccaaacttaaaaatgtatcaatgcggtctaccaaaagaa
atggcaattgagctattcaagcctttcgtaatgaaagagttagtagaacgtggtcttgct
cataatattaaatcagctaaacgtaaaattgagcgtttaaacaacgatgtatgggatgtt
ttagaagatgtgattcgcgagcatccagtattactaaaccgtgcaccaacgcttcaccgt
cttgggattcaagcgtttgaaccaacactagttgaaggtcgtgctattcgtcttcaccca
ttagtatgtacagcttataacgctgacttcgatggtgaccaaatggcggttcacgtacca
ttatcagcagaagcacaagcagaagctcgtcttctaatgcttgctgcacaaaatatcctg
aacccgaaagacggtaaaccagttgtaacaccatctcaagatatggtattaggaaactac
tacttaacgcttgagcgtgaagcagctcgcggcgaaggaacaattttctatgggccaaat
gaagtattaattgcttatgatacaggtcatgttcacttgcatactcgtattgcaattaaa
gcaagttcgctaaataatccaacatttactgaagaacaaaataatatgttcctattaacg
actgttggtaaagtaatctttaacgaaatcttgccgaaatcattcccatacattaacgag
ccaactgatttcaacttagagcaagaaacaccagacaaatactttgttaacttaacaatt
gatgaagaaacgttaaaagagcttgaagcagatgctgcatataatgggcttgatgaaaaa
ggtaaagtggaagcacaacgcacagctgtgctacgcaaacactttgcatcggtaccagtt
gtaaacccattccgtaaaaaattcttaggtaatatcattgctgaagtatttaaacgtttc
cacatcactgaaacatctaaaatgcttgaccgcatgaagaacctaggattcaaatattca
acacgtgctggtatcactgtaggtgtatctgacatcgtcgtattaccagataaaggtgaa
atcttagcggaagctcaagaaaaagtagataaagttcaggcgcaattccgtcgtggtttc
atcacagaagatgagcgttatgatcgcgttatctcaagttggagtgctgcgaaagatgaa
attcaatcgaagctaatgaagtcgcttgagaaaacaaacccaatctttatgatgtctgac
tcaggtgcccgtggtaacgcatctaactttactcagttagcaggtatgcgtggtctgatg
gccaacccggctggtcgtatcatcgaacttccaatcaaatcatcattccgtgaaggttta
acggtattggaatacttcatctctacacatggtgctcgtaaaggtcttgccgatacagcc
ctgaaaactgccgattcaggttacttaactcgtcgtctagtagacgtagcacaagatgtt
atcgttcgtgaagatgactgtggaactgaccgcggtttaacaattggagcgttaatggaa
ggtacagagttaatcgaagcgttagacgaacgtattgttggtcgtcatacgaagaaaaca
atctatcatccagaaacaggcgaagtgattttagcaaaagacggattaatcgatcaagat
attgctcgtatcattatagagctaggtatcgaagaagtgacaatccgttctgcgtttaca
tgtaatacaaaacatggcgtatgtaaaaaatgttacggcatgaacttagcaacaggtgaa
gaggttgaagttggagaagcagttggtattattgcggctcaatcaatcggtgaaccaggt
acacaattaacaatgcgtacattccatacaggtggggttgccggggatgatattacacaa
ggtcttccacgtatccaagagatttttgaagcacgtaatcctaaagggcaatcagttatt
tctgatatcgcaggtactgtttcagacatcactgaaattcgtgaaggtctaaaagagatt
acaattgaaggtgaagtagaaacacgtaaatacgcagcgccttacaatgctcgtctgaaa
gtacaagaaggcgactttgtagaacgtggtcaagtattaacagaaggttctatcgatcca
aaacaattgttaaaagttaaagacgtttcaacagttcaggaatatctattaaaagaagta
caaaaagtataccgtatgcaaggggtagaaattggagataaacatatcgaggtaatggtt
cgccaaatgcttcgtaaagtacgtgtaattgaagctggtgatacagaattattaccagga
tcattactagacatccaccaattctcagaagcaaatgcagatgctgtgttaaaaggcaaa
aaccctgcaacttgtcgtcctgttatcctaggtattacaaaagcttctcttgaaacagaa
tcattcttatctgctgcatcattccaagaaacaactcgtgtgttaacggatgctgctatt
aaaggaaaacgtgatgaacttctaggtctgaaggaaaacgtaattatcggtaaacttgtt
cctgcaggtactggtatgcaacgttaccgtcaaatccgtattgaaaaagatgagcttgac
acagaaaatctaatttctgctgaataa
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integrated database retrieval system
