Lactobacillus amylovorus 30SC: LAC30SC_01250
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Entry
LAC30SC_01250 CDS
T01436
Name
(GenBank) ATP-dependent RNA helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lai
Lactobacillus amylovorus 30SC
Pathway
lai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAC30SC_01250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lai03019
]
LAC30SC_01250
03009 Ribosome biogenesis [BR:
lai03009
]
LAC30SC_01250
Enzymes [BR:
lai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAC30SC_01250
Messenger RNA biogenesis [BR:
lai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAC30SC_01250
Ribosome biogenesis [BR:
lai03009
]
Prokaryotic type
rRNA helicases
LAC30SC_01250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADZ06442
UniProt:
F0TID5
LinkDB
All DBs
Position
261697..263190
Genome browser
AA seq
497 aa
AA seq
DB search
MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL
QTIDKKEKAIQAIIIEPTRELAIQTQEELFRLGRDEHTHVQVVYGGADIGRQIRSLKHHV
PSILVGTPGRLLDHLKRGTINLDKVKAVVLDEADEMLDMGFIQDIESILKYAKNRKQTLL
FSATMPKPILRIGEKFMNHPKIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP
DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTQ
KKMSPLRPPTDAQAFRGQLKQAEAEIEDLMNGDLGKYTQEASELLDNYSALDLVAAFLKN
LSKDSTDVKVKITPEKPLPYKGDGRHHRGGRGKGRNNRGHGNGNYHRRNNHNYRHNGNRG
KRGRGNGHEFIIKNKKD
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttcagaattaggattaaacgatgcgcttcttaaggcaattaaacgctcaggc
tttgaagaagcaactccaatccaggaacaaactattccacttgctttagcgggcaaggat
gtaattggtcaagcgcaaactggtacaggtaagactgctgcttttggtttgccaatttta
caaactattgataaaaaagaaaaagcaattcaagcgatcattattgaaccaacgcgtgaa
ttggctattcagactcaagaggaattattccgtctaggtcgtgatgaacatacccacgta
caagtagtttatggtggagctgatattggtcgtcaaattcgttctttaaagcaccatgta
ccatcaattttagtaggtactccaggacgtttattggatcacttaaagcgtggcacaatc
aatttggacaaagttaaggctgttgttctagatgaagcagacgaaatgcttgatatgggc
tttattcaagatattgaaagcattttgaagtatgccaagaaccgcaagcaaactttgctc
tttagtgcaacgatgcctaagccaatcttacgtattggcgaaaagttcatgaaccatcct
aaaattgttcaaattaaggctaaggaattaactgcagacttaatcgatcaatactttgtt
cgtgccaaagaatcagaaaaattcgacattatgtgtcgtttaatcgatgttcaaggtcca
gacttggctttggtctttggtcgtactaaacgccgcgtagatgagctgacacgtggcttg
caagctcgtggctataatgcagccggtattcacggtgacttgtcacaagctcgcagaatg
gccgtcttgaagcgattccgtgaaggtaagcttgatattttggtagccactgatgtcgct
gctcgtggacttgatatttcaggtgttactcacgtttataactacgatattccgcaagat
ccagattcttacgttcaccgtattggtagaactggtcgtgccggtcaaaacggaatttca
gtaacttttgtaacgccaaatgaaattggctacatgagaaccatcgaacaattaacccag
aagaagatgtcaccacttcgtccacctacagatgcgcaagctttccgtggtcaattgaag
caagctgaagctgaaatcgaagatttgatgaatggtgatttgggcaagtacacgcaagaa
gctagtgaactgcttgataactactcagcacttgatttggttgcagccttcttgaagaat
ctttctaaagattctactgacgttaaggttaagatcaccccagaaaagccacttccatac
aagggagatggtcgtcaccaccgtggcggtcgcggcaagggacgcaacaatcgtggacat
ggcaatggtaattatcatcgtcgcaacaaccacaactatcgtcataatggcaatcgtggt
aagcgcggtcgtggcaatggtcatgaatttattatcaagaataaaaaagattaa
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