Lactobacillus amylovorus 30SC: LAC30SC_05040
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Entry
LAC30SC_05040 CDS
T01436
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lai
Lactobacillus amylovorus 30SC
Pathway
lai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAC30SC_05040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lai03019
]
LAC30SC_05040
03400 DNA repair and recombination proteins [BR:
lai03400
]
LAC30SC_05040
Enzymes [BR:
lai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAC30SC_05040
Messenger RNA biogenesis [BR:
lai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAC30SC_05040
DNA repair and recombination proteins [BR:
lai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LAC30SC_05040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADZ07159
UniProt:
F0TEU3
LinkDB
All DBs
Position
1024166..1025932
Genome browser
AA seq
588 aa
AA seq
DB search
MNPEKVLKQTFGYDSFRPGQKKVIDLVLNKQNVLAVMPTGAGKSLCYQVPALMNAGVTLV
ISPLISLMKDQIDTLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLIYITPERLAIDY
FRYQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLDGINSLKSRPNILALTATATPAVQ
DDICEQLNIPKQNMIITSFARPNLSFKVVNSPQNTPLYIAQYIKMHPDEAGIIYTNTRKK
VESLTDYLAKKGISVGAYHGGMETKERDEVQEAFQFDQVQVIVATNAFGMGIDKSNVRFV
IHASSARNIESYYQEAGRAGRDGEESEAIMIYHPGDLRQYRFFIDESTADEKYRELQYQK
LQAITDYANTGECLQQFIVRYFGQDCEPCGKCSNCLNQDELTDITADAQKVISMVYELDG
RFGKNVVAQCLVGSNNQKMKEMNASQYDYFGSLKMNQKETISLIDYLIASRYLEIEGTKY
PLVHVTNRGWDVLDGKITVKRRIAKVQKKKQIFAQDENPDLYEALRKKRMELARKQRVPA
FMIFSDRSLHDMAKIKPQNEAEFLEVSGVGQAKMQKYGATMIQVIKSF
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaatccagaaaaagtattaaaacaaacttttggctatgatagttttcgtccaggacaa
aagaaagtcattgatttagttttaaataaacagaatgtactagcggtaatgccgactggt
gcagggaagtcgctgtgttatcaagttccagccttgatgaatgcaggcgttaccttggtt
atttcacctttaatttcattaatgaaggatcagattgataccttaaagcaaaacggaatt
aatgcggctgctttaaactctgcgacgccgcaagaagaagtaaatccgattttgcgtcag
gcctatgagggcaagatcaaattgatctatattacgccagaacgtctagcaatcgactat
tttagatatcaacttaatttcttagatatcgatttagttgcagttgatgaagcacactgt
atttctcagtggggacatgattttagaccggcttaccgacagctgcttgatggaataaat
tctttgaagagcagaccaaatattttggccttaactgcaactgccacgccagcggttcaa
gatgatatttgtgagcagttgaatattcctaagcaaaatatgattatcacttcatttgcc
cgtccaaatttgagctttaaggtggttaattcaccgcaaaacacgccactttatattgca
cagtacatcaaaatgcatcccgatgaagcagggatcatctacaccaatacgcgtaagaaa
gtagagagcctaactgattatttagctaaaaaaggtatctcagttggagcctatcatggc
gggatggagactaaagaaagagacgaagtacaagaagcgtttcaatttgatcaagttcag
gtaattgttgccactaatgccttcggaatgggaattgataaaagcaatgtccgctttgtc
attcatgcctcaagtgctcgtaatattgaaagctactatcaagaagcaggacgtgctggt
cgagatggcgaagaaagtgaagcaattatgatctaccatccgggagatttgcgccagtat
cgcttctttatcgatgaatcaacggctgatgaaaaataccgcgaattgcagtatcaaaaa
ttgcaagcaatcaccgattatgccaatacgggtgagtgtttgcagcagtttatcgtgcgc
tatttcgggcaagactgtgaaccttgcggcaagtgctctaattgtttaaaccaagatgaa
ttaactgatattacggccgatgcgcaaaaagtgatttcgatggtttacgaacttgatggt
cggtttggtaaaaacgttgtagcgcagtgtctagttggttcaaataatcaaaaaatgaaa
gagatgaatgcttcacagtacgattattttggtagcttaaaaatgaatcaaaaagagaca
atcagcttaattgactatctaattgcgtctagatatttagaaattgaaggcacgaaatat
ccgttagttcatgtgactaatcgtggttgggatgtgctcgatggcaaaataacagtaaaa
agacgaattgccaaggtccaaaagaaaaagcaaatttttgctcaggatgaaaatccagat
ttatatgaagcattacgaaagaagagaatggaattagccagaaagcaaagagtacctgca
tttatgatcttttctgatcgcagcctgcatgatatggctaagatcaaaccacaaaatgaa
gcagagttcttagaagtcagtggggtaggtcaagccaaaatgcaaaagtatggtgcaacc
atgattcaggtaattaagagcttttag
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