Lingula anatina: 106159544
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Entry
106159544 CDS
T04921
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lak
Lingula anatina
Pathway
lak03013
Nucleocytoplasmic transport
lak03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lak00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106159544
03015 mRNA surveillance pathway
106159544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lak03019
]
106159544
Enzymes [BR:
lak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106159544
5.6.2.5 RNA 5'-3' helicase
106159544
Messenger RNA biogenesis [BR:
lak03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106159544
mRNA cycle factors
Common to processing body (P body) and stress granule
106159544
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
NPHP3_N
UvrD-helicase
SLFN-g3_helicase
NAT10_TcmA_helicase
ATPase
AAA_16
nSTAND3
SRP54
AAA_22
PhoH
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
106159544
NCBI-ProteinID:
XP_013391305
UniProt:
A0A1S3J1F6
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLLGADTQGSEFDFTDFTLPSQTQSQTQASQLDGGQSQS
QALGIEPVQNGIGGVSQGIGELTFEDDEEDAFYMKDLPKHACMYCGIHDPACVVYCNMTK
KWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETILECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCATQSNLKDMNWDPSQWQPLIQDRQFLPWLVKVPSEQEQLRARQITAQQ
INKLEELWKDNPEAAIEDLEKPGVDEEPSQVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDKIVVRWDVGLNKKRIAYFVFPKANEEMKLMHGDELRLRYLGEMHKPWSGVGHVI
KIPDNFSEEVAIELKSNAGVPAECTHNFVVDFVWKSTSFDRMQASLKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLAKQTQGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMESVPELSKLQQLKDETGELSASDEKRFRTLKKQCEKELLQHADVICCTCVGAG
DPRLGKMQFRCVLIDESTQSTEPECMIPVVLGSRQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSNFPSNIFYEGSLQNGVTAAERTKKQVDFPWPQ
PDKPMLFYATTGQEELASSGTSYLNRTEAANVEKIATRFLRSGVKPDQIGIITPYEGQRA
FICQYMQFSGQLHQKLYQEIEVASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGNIVVGNPKVLSKQPLWNHLLTHYKEMKVLVEGPLNNLKESMIQFSKPRKLVN
AANPGGRFMSNTMFSAREAMIPGSVYDRSHMMNGGTNFQRELFIPTHDQLGYIGPERAYT
ASLPVPVGMFIPPMQPAYQQQMLGGRGGAARRGGQKGGRQKPPRYTQQNTSQMSQNSLMS
SQASQDGTQPYSQGPLTQGGLSMSQPFTMSQPGLSGLSQPELSQDSYMGEEFKSQADMLL
SQDSTYQGDRAFFPSQPLSQGGQFSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagatgcgtacggtccaagctctcaaaccttgacctttttggacacagaagaa
gcggatctcctgggtgcggatactcaagggtctgaattcgattttacagattttacctta
ccatcgcagacccagtcacaaactcaggcatctcagctagatggaggtcaaagccaaagt
caggctttgggcattgaacctgtccaaaatggcattggaggagtttcccaaggtattggg
gagctgacatttgaagatgacgaggaagatgcattttatatgaaagatttaccaaagcat
gcttgcatgtactgtggtatccatgacccagcatgtgtggtatactgcaatatgaccaag
aagtggttctgtaatggaaggggaaatacatctggcagtcatatcataaaccatctagta
cgagccaaggcaaaggaggttacactgcacaaggatggaccactgggggagactatccta
gaatgctacaactgtggctgtaggaatgtatttctcttgggtttcatacctgctaaggca
gactctgtggtggtactgctgtgtaggcagccttgtgccacacagagcaatctaaaggac
atgaactgggacccaagtcagtggcaacctctgattcaagatcgtcagttccttccttgg
ttggtgaaagttccatctgagcaggagcagttaagggcacgtcagatcactgcacaacaa
atcaataagctagaagagctttggaaggacaacccagaggctgccattgaggacttggag
aaacctggagtggatgaggaaccatcccaagtactgctaagatatgaggatgcctaccag
taccagaacatctttggaccgctggtgaaactggaggcagactatgacaagaaactgaag
gaatcgcagactcaggacaagatcgtggttcgctgggatgttggcttaaacaagaaaagg
attgcttactttgtgtttcccaaggctaatgaagagatgaaactgatgcatggagatgaa
ctgcgcctcaggtacttgggagagatgcacaagccctggtcaggagtgggccatgtgatc
aagattccagacaacttcagtgaagaagtggccatagagctgaagagtaatgctggtgta
cctgctgagtgcacacacaactttgtggtggattttgtgtggaaatccacttcatttgat
agaatgcaggcatctctgaagacatttgctgtggatgaaacctctgtgtcaggatacatc
taccacaagttgctgggacacgaggtggaggatgtggtgatcaaatgtcagctgccgaag
aggttcagtgccccaggactccctgagctcaaccactcccaggtttatgctgtgaagact
gtgctgcagagaccattgagcttgattcagggtccaccaggtactggcaagactgttaca
tctgcaacagttgtgtatcaccttgccaagcagacccaggggcaggttcttgtctgtgca
ccttctaacattgctgtagatcagctgacagagaaaatacacaagactggtctcaaagtg
gtgcgtttgtgtgccaagagcagggaagccattgactccccagtgtcattcctggccttg
cacaaccagataaggaacatggaaagcgtgccagagctgtccaagctgcagcagttgaaa
gatgaaacgggagagctctcggcttctgatgagaaacgattccgcacattgaagaagcag
tgtgagaaagaattgctgcaacatgctgatgtcatatgctgcacatgcgttggagctggt
gatccacggctgggcaagatgcagttccgctgtgtcctgattgatgagagcacccagtcc
acagagccggagtgcatgatcccagtggtcctggggagcaggcagctgatcctggtggga
gatcactgtcagctgggccctgtggtcatgtgcaagaaggccgccaaggcaggcctgtcc
cagtccctgtttgagcgtcttgttgtgctggggatacgtcctatccgactgcaggtgcag
tacagaatgcaccctgcccttagtaatttcccttctaatatattttatgagggttcatta
cagaatggagtgacagccgctgagagaactaaaaaacaagtggactttccttggcctcag
ccagacaagcccatgttgttctatgccactactggacaagaagagctggcctcatctgga
acgtcctacttgaacaggactgaggctgcaaatgtggagaaaattgccacacgctttttg
cgttctggtgtgaaacctgaccagatcggaatcattacaccatatgagggacagcgggct
tttatatgccagtacatgcagttcagtggacagctacaccagaaactgtatcaggaaata
gaggtggctagtgttgatgcattccaaggcagagagaaggatttcatcatcctttcttgt
gtgagagcaaatgaacaccagggaattggattcttgaatgatcccaggcgtctgaatgtg
gcactgactagagctaggtatggtaacattgtggttggaaaccccaaagtgctctctaag
caaccactgtggaaccacttgctgactcattacaaggagatgaaagttttagtggaaggg
ccactgaacaacctcaaagagagcatgattcagttcagcaaacccagaaaactggttaat
gctgcaaatcctggtggccgtttcatgagtaacaccatgttcagtgcccgtgaagccatg
atcccaggcagcgtgtatgacaggagccacatgatgaatggaggtaccaacttccagagg
gaactgtttatccccacacatgaccagctaggctacataggacctgagagggcatacact
gccagcctgccagttccagtgggcatgttcataccaccaatgcagcctgcctaccagcaa
cagatgcttggtggtcgtggaggtgcagcgagaagaggaggtcagaagggaggaagacag
aaacctcctcgttatacacagcagaacacctcgcagatgtcccaaaactctctgatgagc
agtcaagccagtcaggatggcacacagccctactcccagggccctctcactcaaggtggt
ttgtccatgagccagcctttcaccatgagtcaaccaggactgtctggcctttctcagcct
gaactctcacaggacagctacatgggtgaagaattcaagtctcaggcagacatgttgctg
tctcaggactccacctaccaaggggaccgtgcctttttcccatctcagccactgtcccag
ggaggccaattctcacagtactag
DBGET
integrated database retrieval system
