Lingula anatina: 106159803
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Entry
106159803 CDS
T04921
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lak
Lingula anatina
Brite
KEGG Orthology (KO) [BR:
lak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lak03016
]
106159803
Enzymes [BR:
lak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
106159803
Transfer RNA biogenesis [BR:
lak03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
106159803
Prokaryotic type
tRNA splicing ligases
106159803
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
106159803
NCBI-ProteinID:
XP_013391661
UniProt:
A0A1S3I1F1
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRTYKEELRFLEKLSDCCWKIRKGFVSNMKVDGVFYVNEHLEKLMFDELKASCNSQGF
GGFLPGMKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMDDPKAVVSPGGVGFD
INCGVRLLRTNLFEKDVLPVKEQLAQSLFDHIPVGVGSKGVIPMTAKDLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLQSDPSKVSFRAKKRGLPQLGTLGAGNHYAEIQVADKIFD
KFAAKKMGIEEEGQVCVMIHSGSRGMGHQVATDALVAMEKAMKRDQIEVNDRQLACAHIA
SQEGQDYLKGMAAAANYAWVNRTSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVE
EHWIDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEHGM
QETFGSTCHGAGRALSRAKSRRNLDYTMVLDALAEKGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIQLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgaggacatataaggaagagttacgcttcttagagaagttatctgactgttgt
tggaaaatcagaaaaggcttcgtgtctaatatgaaggtggatggagtattttacgtgaat
gaacacctagagaaacttatgtttgatgaactgaaggcatcatgtaacagtcaaggtttt
gggggtttcctaccagggatgaaacaaatagcaaatgttgcagctctaccaggcattgtt
gggaaatcagttggtcttccggatgtacattctggatacgggtttgcaattggtaacatg
gctgcctttgacatggatgaccccaaggcagttgtgtccccagggggtgtggggtttgac
attaactgtggggtcagactattaaggactaatctctttgagaaagatgttctccccgtc
aaggagcagcttgcacagagtttgtttgatcatattccagttggagttggttcgaaaggt
gtgatacctatgacagcaaaagatctagaggaggccttggagatggggatggactggtca
ctcagagagggttatgcgtgggcagaggacaaggaacattgtgaggagtatggacgcatg
ctgcagtctgatccttccaaagtcagcttcagagcaaagaagagaggtctgccacagctg
ggcaccctgggggcagggaaccactacgcagagatacaagtggctgacaaaatctttgac
aagtttgctgccaagaagatggggatagaggaagagggtcaggtgtgtgtgatgatccac
agtggtagtcgtggcatgggacaccaggtggcgacagatgcactggttgctatggagaag
gccatgaagcgagatcagatcgaggtcaatgaccgtcagctggcctgtgcccacattgcc
tcccaggaaggccaggactacttgaaaggaatggcagctgctgcaaactacgcctgggtc
aataggacaagtatgacctttcttactagacaggcctttgccaaaatgttcaacaccacc
ccagatgacctggacatgcacgttatatatgatgtgtctcataacattgccaaagtggag
gaacactggatagatgggaagcagaagacgttactggtgcacaggaaggggtcaaccaga
gcatttcctccacaccatcctcttatccctgtggactatcagttaactggtcagccagtg
ttaatagggggcactatgggtacatgcagctatgtgttaacgggaacagaacatggcatg
caggaaaccttcggatctacttgccatggggcaggaagagcgctttcccgagccaaatca
cgacggaatcttgactatacgatggttctagatgctttagccgaaaaagggatatccatt
cgtgttgcctcaccaaaactagtcatggaagaagcaccagaatcctacaaaaatgtaaca
gatgttgtggatacctgtcatgcagctggcataagtaaaaaatgtattcaacttaggcct
atagcagtcatcaagggatga
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