Lingula anatina: 106160881
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Entry
106160881 CDS
T04921
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lak
Lingula anatina
Pathway
lak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106160881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lak03041
]
106160881
Enzymes [BR:
lak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106160881
Spliceosome [BR:
lak03041
]
Complex C
Other components
Step II factors
106160881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
106160881
NCBI-ProteinID:
XP_013393104
UniProt:
A0A1S3I6W3
LinkDB
All DBs
Position
Unknown
AA seq
648 aa
AA seq
DB search
MVGCTQPRRVAAMSVAKRVSEEMGSKLGDEVGYAIRFEDCTSEKTIIKYMTDGILLRESL
RESDLDNYSAIIMDEAHERSLNTDVLFGLLREVVARRQDLKLIVTSATMDATKFSTFFGN
VPVYIIPGRTFPVDIFFSKNTVEDYVDAAVKQALQVHLMGNPGDILIFMPGQEDIEVTCE
LLAERLDELDEAPPLAILPIYSQLPSDLQAKIFQKAPDGIRKAVVATNIAETSLTVDGIQ
FVVDAGFCKLKVFNPKIGMDALSVFPISQANANQRSGRAGRTGPGQCFRLYTERQYKDEL
LVTTVPEIQRTNLANVVLLLKSLGVQNLLQFHFMDPPPQDNILNSMYQLWVLGALDNTGS
LTSLGRQMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFFRPKGREEDSDSAR
EKFQVPESDHLTFLNVYLQWKRNNYSSSWCQEHFVHVKAMRKVREVRQQLKEIMDQQKMD
FVSCGQEWDIIRKCICSSYFHQAARMKGLGEYVNMRTGMPCHLHPTSALFGMGYTPDYIV
YHELIMTSKEYMQCVTAVDGHWLAELGPMFYSVKESSKTRNENRQKEAADMTAMEEEMKK
AEEQIKLRKEEQEKALVDTSKRNQIVTPGRKEPGTPFTPRRPRSKIGI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggtgggctgcacacaacctcgtcgagtggcggccatgtctgtcgccaaacgagtctcg
gaagagatggggagtaagctcggggatgaagtggggtatgctattcgatttgaggattgt
acctcggagaaaacaattatcaagtacatgacagatggtatactgctgagagaatcactg
cgtgagtctgacctagataactacagtgcaatcatcatggatgaagctcacgaacggtca
ctaaatactgatgtcttgtttggtttactgagggaggttgttgctaggcgacaggatctc
aagttaatcgtcacctcagcaaccatggatgccaccaaattctccaccttcttcggcaac
gtcccggtgtacataatacctggcaggacattccctgtggacatcttctttagcaagaac
acggtggaggactatgtggatgcagcagtcaagcaggccttgcaggtccacctgatgggc
aacccaggtgacatattgatcttcatgccaggccaggaggacattgaggtgacatgtgaa
ctgctggcagagcgtcttgatgagcttgacgaggcgcccccactggctatcttgcccatc
tactcccagctgcccagtgatctccaggccaagatctttcagaaggccccagatgggatc
aggaaagctgtggtggccaccaatatagccgagacctccctcacagtggatggtatacag
tttgtggtagatgctggtttctgcaagctgaaggtgttcaaccctaagattggtatggat
gctctctctgtgttccctattagtcaggccaatgccaaccagaggtcagggagagcagga
agaacaggccctggccagtgcttcaggctgtacacagagcgccaatacaaggacgagttg
ctggtgactacagtgccagagatccagagaaccaacctggccaacgtggtgctcctgctc
aagtccctaggggtgcagaatctcctccagttccacttcatggatccacctccacaggat
aacatcctgaactccatgtaccagctgtgggttctgggagctctggacaacacgggttcc
ctgacgtccctgggaagacaaatggtggagttccctctggaccccgcgctgtccaagatg
ttgattgtctcctgtgatatgggctgcagtgcagatatactgatcatagtgtccatgtta
tctgtcccagccattttcttcagaccaaaaggaagagaagaagactcagattctgccaga
gaaaagtttcaggttccagagagtgaccatttgacctttcttaatgtctatctacagtgg
aagagaaataactattcctccagctggtgtcaggaacattttgtccatgtcaaggcaatg
aggaaggtccgtgaggtgcgtcaacagctgaaggagataatggaccagcagaagatggac
ttcgtgtcctgtggccaggagtgggatatcatcaggaagtgtatctgttcatcctacttc
caccaggcagccaggatgaagggtcttggtgaatatgtcaacatgaggacagggatgccc
tgtcacctacaccccaccagtgcactgtttggcatgggttatactccagactacatagtc
taccatgaactgatcatgacatccaaggaatacatgcagtgtgtgactgctgtggatgga
cactggctagctgaactgggaccaatgttttatagtgtcaaagaatcatcgaagacaaga
aatgaaaaccgccagaaggaagcagcggacatgactgccatggaggaagagatgaagaaa
gccgaggagcagattaagttaagaaaggaggagcaagagaaggctttggttgatacgagc
aaaaggaaccaaattgtcaccccaggaaggaaagaaccaggcactccatttacccccaga
agaccaaggtccaagataggaatttga
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